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    LOC105376944 uncharacterized LOC105376944 [ Homo sapiens (human) ]

    Gene ID: 105376944, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105376944
    Gene description
    uncharacterized LOC105376944
    See related
    Ensembl:ENSG00000189229
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105376944 in Genome Data Viewer
    Location:
    3p26.1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (6490442..6736739)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (6485700..6727327)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (6532129..6778426)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376942 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:6325607-6326107 Neighboring gene uncharacterized LOC124909341 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:6531900-6533099 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_70950 Neighboring gene MPRA-validated peak4528 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19389 Neighboring gene GRM7 antisense RNA 3 Neighboring gene YWHAQ pseudogene Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:6810923-6811530 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:6811531-6812137 Neighboring gene uncharacterized LOC105376943 Neighboring gene mitochondrial ribosomal protein S36 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes. Speek M. Mol Cell Biol, 2001 Mar. PMID 11238933, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    General gene information

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    Clone Names

    • AC069277.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188693.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277
      Related
      ENST00000689328.1

    2. NR_188694.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277
      Related
      ENST00000655754.1

    3. NR_188695.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277

    4. NR_188696.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277

    5. NR_188697.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277

    6. NR_188698.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277

    7. NR_188699.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277

    8. NR_188700.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277

    9. NR_188701.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277
      Related
      ENST00000671370.1

    10. NR_188702.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277

    11. NR_188703.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277
      Related
      ENST00000668643.1

    12. NR_188704.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277

    13. NR_188705.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277

    14. NR_188706.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277

    15. NR_188707.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277
      Related
      ENST00000669798.1

    16. NR_188708.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277

    17. NR_188709.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277

    18. NR_188710.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277

    19. NR_188711.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024162, AC069277

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      6490442..6736739
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      6485700..6727327
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials