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    FANCE FA complementation group E [ Homo sapiens (human) ]

    Gene ID: 2178, updated on 14-Nov-2024

    Summary

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    Official Symbol
    FANCEprovided by HGNC
    Official Full Name
    FA complementation group Eprovided by HGNC
    Primary source
    HGNC:HGNC:3586
    See related
    Ensembl:ENSG00000112039 MIM:613976; AllianceGenome:HGNC:3586
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FAE; FACE
    Summary
    The Fanconi anemia complementation group (FANC) currently includes FANCA, FANCB, FANCC, FANCD1 (also called BRCA2), FANCD2, FANCE, FANCF, FANCG, FANCI, FANCJ (also called BRIP1), FANCL, FANCM and FANCN (also called PALB2). The previously defined group FANCH is the same as FANCA. Fanconi anemia is a genetically heterogeneous recessive disorder characterized by cytogenetic instability, hypersensitivity to DNA crosslinking agents, increased chromosomal breakage, and defective DNA repair. The members of the Fanconi anemia complementation group do not share sequence similarity; they are related by their assembly into a common nuclear protein complex. This gene encodes the protein for complementation group E. [provided by RefSeq, Jul 2008]
    Expression
    Broad expression in placenta (RPKM 5.1), testis (RPKM 5.0) and 24 other tissues See more
    Orthologs
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    Genomic context

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    See FANCE in Genome Data Viewer
    Location:
    6p21.31
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (35452338..35467102)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (35275414..35290178)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (35420115..35434879)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17089 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17090 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17091 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24399 Neighboring gene peroxisome proliferator activated receptor delta Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:35328305-35329201 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24400 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24401 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24402 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:35351066-35351668 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:35359676-35360244 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24403 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24404 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:35378432-35378965 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:35378966-35379498 Neighboring gene Sharpr-MPRA regulatory region 9405 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17092 Neighboring gene makorin ring finger protein 6, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24405 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:35435944-35436500 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24406 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24407 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:35447729-35448229 Neighboring gene microRNA 7111 Neighboring gene ribosomal protein L10a Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:35453191-35453766 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:35454343-35454918 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:35456069-35456644 Neighboring gene TEA domain transcription factor 3 Neighboring gene VISTA enhancer hs1887 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:35463100-35463885 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17093 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:35464832-35465762

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Classification of Fanconi anemia patients by complementation analysis: evidence for a fifth genetic subtype. Joenje H, et al. Blood, 1995 Sep 15. PMID 7662964
    2. Histological and transcriptomic analysis of Fance-deficient PGCs reveal the possible mechanisms of their depletion. Suye S, et al. Reproduction, 2023 Jul 1. PMID 37184052
    3. The Fanconi anemia group E gene, FANCE, maps to chromosome 6p. Waisfisz Q, et al. Am J Hum Genet, 1999 May. PMID 10205272, Free PMC Article
    4. Comprehensive analysis of macrophage-related multigene signature in the tumor microenvironment of head and neck squamous cancer. Lin B, et al. Aging (Albany NY), 2021 Feb 11. PMID 33592580, Free PMC Article
    5. Fanconi Anemia Complementation Group E, a DNA Repair-Related Gene, Is a Potential Marker of Poor Prognosis in Hepatocellular Carcinoma. Takahashi J, et al. Oncology, 2022. PMID 34724663

    See all (68) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Histological and transcriptomic analysis of Fance-deficient PGCs reveal the possible mechanisms of their depletion.
      Title: Histological and transcriptomic analysis of Fance-deficient PGCs reveal the possible mechanisms of their depletion.
    2. Fanconi Anemia Complementation Group E, a DNA Repair-Related Gene, Is a Potential Marker of Poor Prognosis in Hepatocellular Carcinoma.
      Title: Fanconi Anemia Complementation Group E, a DNA Repair-Related Gene, Is a Potential Marker of Poor Prognosis in Hepatocellular Carcinoma.
    3. Comprehensive analysis of macrophage-related multigene signature in the tumor microenvironment of head and neck squamous cancer.
      Title: Comprehensive analysis of macrophage-related multigene signature in the tumor microenvironment of head and neck squamous cancer.
    4. A novel alternative splicing event of the FANCE gene has been characterized. FANCEDelta4 cannot support the activation of the FANC-BRCA pathway and DNA repair.
      Title: Analysis of a FANCE Splice Isoform in Regard to DNA Repair.
    5. a phenylalanine located at the highly conserved extreme C terminus, referred to as Phe-522, is a critical residue for mediating the monoubiquitination of the FANCD2-FANCI complex.
      Title: The carboxyl terminus of FANCE recruits FANCD2 to the Fanconi Anemia (FA) E3 ligase complex to promote the FA DNA repair pathway.
    6. Observational study of gene-disease association and gene-gene interaction. (HuGE Navigator)
      Title: Comprehensive screen of genetic variation in DNA repair pathway genes and postmenopausal breast cancer risk.
    7. Observational study and meta-analysis of gene-disease association. (HuGE Navigator)
      Title: Polymorphism in the IL18 gene and epithelial ovarian cancer in non-Hispanic white women.
    8. Observational study of gene-disease association. (HuGE Navigator)
      Title: Investigation of genetic susceptibility factors for human longevity - a targeted nonsynonymous SNP study.
    9. Chk1-mediated phosphorylation of FANCE is required for a function independent of FANCD2 monoubiquitination.
      Title: Chk1-mediated phosphorylation of FANCE is required for the Fanconi anemia/BRCA pathway.
    10. This Fanconi anemia protein promotes the nuclear accumulation of FANCC.
      Title: The Fanconi anemia protein, FANCE, promotes the nuclear accumulation of FANCC.
    Submit: New GeneRIF Correction See all GeneRIFs (14)

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Associated conditions

    Description Tests
    Fanconi anemia complementation group E
    MedGen: C3160739 OMIM: 600901 GeneReviews: Fanconi Anemia
    		Compare labs

    EBI GWAS Catalog

    Description
    Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in interstrand cross-link repair NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Fanconi anaemia nuclear complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of Fanconi anaemia nuclear complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of Fanconi anaemia nuclear complex NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in centrosome IDA
    Inferred from Direct Assay
    more info
    		  
    located_in chromatin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chromosome IDA
    Inferred from Direct Assay
    more info
    		  
    located_in cytosol TAS
    Traceable Author Statement
    more info
    		  
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		  
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
    		  
    located_in nucleus NAS
    Non-traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Fanconi anemia group E protein
    Names
    Fanconi anemia complementation group E

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_011708.1 RefSeqGene

      Range
      5001..19744
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_498

    mRNA and Protein(s)

    1. NM_001410876.1 → NP_001397805.1  Fanconi anemia group E protein isoform 2

      Status: REVIEWED

      Source sequence(s)
      AL022721
      Consensus CDS
      CCDS93899.1
      UniProtKB/TrEMBL
      A0A8Q3WL50
      Related
      ENSP00000512511.1, ENST00000696264.1

    2. NM_021922.3 → NP_068741.1  Fanconi anemia group E protein isoform 1

      See identical proteins and their annotated locations for NP_068741.1

      Status: REVIEWED

      Source sequence(s)
      AF265210, AL022721
      Consensus CDS
      CCDS4805.1
      UniProtKB/Swiss-Prot
      A8K907, Q4ZGH2, Q9HB96
      UniProtKB/TrEMBL
      A0A3B3ITU7
      Related
      ENSP00000229769.2, ENST00000229769.3
      Conserved Domains (1) summary
      pfam11510
      Location:274 → 535
      FA_FANCE; Fanconi Anaemia group E protein FANCE

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      35452338..35467102
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005248887.3 → XP_005248944.1  Fanconi anemia group E protein isoform X3

      UniProtKB/TrEMBL
      A0A3B3ITU7
      Conserved Domains (1) summary
      cl12008
      Location:274 → 493
      FANCE_c-term; Fanconi anemia complementation group E protein, C-terminal domain

    2. XM_005248885.3 → XP_005248942.1  Fanconi anemia group E protein isoform X1

      UniProtKB/TrEMBL
      A0A3B3ITU7
      Conserved Domains (1) summary
      pfam11510
      Location:274 → 528
      FA_FANCE; Fanconi Anaemia group E protein FANCE

    3. XM_005248886.3 → XP_005248943.1  Fanconi anemia group E protein isoform X2

      UniProtKB/TrEMBL
      A0A3B3ITU7
      Conserved Domains (1) summary
      cl12008
      Location:274 → 512
      FANCE_c-term; Fanconi anemia complementation group E protein, C-terminal domain

    4. XM_047418300.1 → XP_047274256.1  Fanconi anemia group E protein isoform X4

    5. XM_047418303.1 → XP_047274259.1  Fanconi anemia group E protein isoform X7

    6. XM_047418301.1 → XP_047274257.1  Fanconi anemia group E protein isoform X5

      UniProtKB/TrEMBL
      A0A8Q3WMB8
      Related
      ENSP00000512512.1, ENST00000696265.1

    7. XM_047418302.1 → XP_047274258.1  Fanconi anemia group E protein isoform X6

    8. XM_011514343.3 → XP_011512645.1  Fanconi anemia group E protein isoform X6

      See identical proteins and their annotated locations for XP_011512645.1

      UniProtKB/TrEMBL
      A0A3B3ITU7
      Conserved Domains (1) summary
      pfam11510
      Location:176 → 437
      FA_FANCE; Fanconi Anaemia group E protein FANCE

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      35275414..35290178
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054354496.1 → XP_054210471.1  Fanconi anemia group E protein isoform X3

    2. XM_054354494.1 → XP_054210469.1  Fanconi anemia group E protein isoform X1

    3. XM_054354495.1 → XP_054210470.1  Fanconi anemia group E protein isoform X2

    4. XM_054354497.1 → XP_054210472.1  Fanconi anemia group E protein isoform X4

    5. XM_054354501.1 → XP_054210476.1  Fanconi anemia group E protein isoform X7

    6. XM_054354498.1 → XP_054210473.1  Fanconi anemia group E protein isoform X5

      UniProtKB/TrEMBL
      A0A8Q3WMB8

    7. XM_054354500.1 → XP_054210475.1  Fanconi anemia group E protein isoform X6

    8. XM_054354499.1 → XP_054210474.1  Fanconi anemia group E protein isoform X6

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9HB96.1 GenPept UniProtKB/Swiss-Prot:Q9HB96

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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