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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001379439.1 → NP_001366368.1 E3 ubiquitin-protein ligase LRSAM1 isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1 and encodes the longest isoform (a). Variants 1-3 all encode the same isoform (a).
- Source sequence(s)
-
AL731852, AL929154
- UniProtKB/Swiss-Prot
-
Q80ZI6
- Conserved Domains (5) summary
-
- cd09523
Location:567 → 631
- SAM_TAL; SAM domain of TAL subfamily
- COG1196
Location:250 → 559
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- COG4886
Location:65 → 189
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:33 → 54
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:678 → 717
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
-
NM_001379440.1 → NP_001366369.1 E3 ubiquitin-protein ligase LRSAM1 isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a). Variants 1-3 all encode the same isoform (a).
- Source sequence(s)
-
AL731852, AL929154
- UniProtKB/Swiss-Prot
-
Q80ZI6
- Conserved Domains (5) summary
-
- cd09523
Location:567 → 631
- SAM_TAL; SAM domain of TAL subfamily
- COG1196
Location:250 → 559
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- COG4886
Location:65 → 189
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:33 → 54
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:678 → 717
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
-
NM_001379441.1 → NP_001366370.1 E3 ubiquitin-protein ligase LRSAM1 isoform b
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
- Conserved Domains (5) summary
-
- cd09523
Location:548 → 612
- SAM_TAL; SAM domain of TAL subfamily
- COG1196
Location:231 → 540
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- COG4886
Location:46 → 170
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:36 → 60
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:659 → 698
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
-
NM_001379442.1 → NP_001366371.1 E3 ubiquitin-protein ligase LRSAM1 isoform c
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
- Conserved Domains (6) summary
-
- PTZ00266
Location:225 → 361
- PTZ00266; NIMA-related protein kinase; Provisional
- cd09523
Location:540 → 604
- SAM_TAL; SAM domain of TAL subfamily
- COG4886
Location:65 → 189
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- TIGR02168
Location:300 → 562
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- sd00033
Location:33 → 54
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:651 → 690
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
-
NM_001379443.1 → NP_001366372.1 E3 ubiquitin-protein ligase LRSAM1 isoform d
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
- Conserved Domains (6) summary
-
- PTZ00266
Location:206 → 342
- PTZ00266; NIMA-related protein kinase; Provisional
- cd09523
Location:521 → 585
- SAM_TAL; SAM domain of TAL subfamily
- COG4886
Location:46 → 170
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- TIGR02168
Location:281 → 543
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- sd00033
Location:36 → 60
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:632 → 671
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
-
NM_001409996.1 → NP_001396925.1 E3 ubiquitin-protein ligase LRSAM1 isoform e
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
-
NM_001409997.1 → NP_001396926.1 E3 ubiquitin-protein ligase LRSAM1 isoform e
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
-
NM_001409998.1 → NP_001396927.1 E3 ubiquitin-protein ligase LRSAM1 isoform a
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
- UniProtKB/Swiss-Prot
-
Q80ZI6
-
NM_001409999.1 → NP_001396928.1 E3 ubiquitin-protein ligase LRSAM1 isoform a
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
- UniProtKB/Swiss-Prot
-
Q80ZI6
-
NM_001410000.1 → NP_001396929.1 E3 ubiquitin-protein ligase LRSAM1 isoform a
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
- UniProtKB/Swiss-Prot
-
Q80ZI6
-
NM_001410001.1 → NP_001396930.1 E3 ubiquitin-protein ligase LRSAM1 isoform a
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
- UniProtKB/Swiss-Prot
-
Q80ZI6
-
NM_001410002.1 → NP_001396931.1 E3 ubiquitin-protein ligase LRSAM1 isoform a
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
- UniProtKB/Swiss-Prot
-
Q80ZI6
-
NM_001410003.1 → NP_001396932.1 E3 ubiquitin-protein ligase LRSAM1 isoform f
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
-
NM_001410004.1 → NP_001396933.1 E3 ubiquitin-protein ligase LRSAM1 isoform c
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
-
NM_001410005.1 → NP_001396934.1 E3 ubiquitin-protein ligase LRSAM1 isoform g
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
-
NM_001410006.1 → NP_001396935.1 E3 ubiquitin-protein ligase LRSAM1 isoform h
Status: VALIDATED
- Source sequence(s)
-
AL731852
-
NM_001410007.1 → NP_001396936.1 E3 ubiquitin-protein ligase LRSAM1 isoform h
Status: VALIDATED
- Source sequence(s)
-
AL731852
-
NM_001410008.1 → NP_001396937.1 E3 ubiquitin-protein ligase LRSAM1 isoform h
Status: VALIDATED
- Source sequence(s)
-
AL731852
-
NM_199302.3 → NP_955006.1 E3 ubiquitin-protein ligase LRSAM1 isoform a
See identical proteins and their annotated locations for NP_955006.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1 and encodes the longest isoform (a). Variants 1-3 all encode the same isoform (a).
- Source sequence(s)
-
AL731852, AL929154
- Consensus CDS
-
CCDS15935.1
- UniProtKB/Swiss-Prot
-
Q80ZI6
- Related
- ENSMUSP00000108825.2, ENSMUST00000113200.8
- Conserved Domains (5) summary
-
- cd09523
Location:567 → 631
- SAM_TAL; SAM domain of TAL subfamily
- COG1196
Location:250 → 559
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- COG4886
Location:65 → 189
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:33 → 54
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:678 → 717
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
RNA
-
NR_176928.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
-
NR_176929.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
-
NR_176930.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
-
NR_176931.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
-
NR_176932.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL731852, AL929154
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000068.8 Reference GRCm39 C57BL/6J
- Range
-
32815227..32851666 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006497965.3 → XP_006498028.1 E3 ubiquitin-protein ligase LRSAM1 isoform X1
See identical proteins and their annotated locations for XP_006498028.1
- Conserved Domains (5) summary
-
- cd09523
Location:598 → 662
- SAM_TAL; SAM domain of TAL subfamily
- COG4886
Location:96 → 220
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:64 → 85
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:709 → 748
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
- pfam17380
Location:289 → 505
- DUF5401; Family of unknown function (DUF5401)
-
XM_036160883.1 → XP_036016776.1 E3 ubiquitin-protein ligase LRSAM1 isoform X5
- Conserved Domains (6) summary
-
- PTZ00266
Location:237 → 373
- PTZ00266; NIMA-related protein kinase; Provisional
- cd09523
Location:552 → 616
- SAM_TAL; SAM domain of TAL subfamily
- COG4886
Location:77 → 201
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- TIGR02168
Location:312 → 574
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- sd00033
Location:67 → 91
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:663 → 702
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
-
XM_006497967.3 → XP_006498030.1 E3 ubiquitin-protein ligase LRSAM1 isoform X2
- Conserved Domains (5) summary
-
- cd09523
Location:579 → 643
- SAM_TAL; SAM domain of TAL subfamily
- COG4886
Location:77 → 201
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:67 → 91
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:690 → 729
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
- pfam17380
Location:270 → 486
- DUF5401; Family of unknown function (DUF5401)
-
XM_006497968.3 → XP_006498031.1 E3 ubiquitin-protein ligase LRSAM1 isoform X3
- Conserved Domains (5) summary
-
- cd09523
Location:571 → 635
- SAM_TAL; SAM domain of TAL subfamily
- COG4886
Location:96 → 220
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:64 → 85
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:682 → 721
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
- pfam17380
Location:289 → 506
- DUF5401; Family of unknown function (DUF5401)
-
XM_006497963.4 → XP_006498026.1 E3 ubiquitin-protein ligase LRSAM1 isoform X1
See identical proteins and their annotated locations for XP_006498026.1
- Conserved Domains (5) summary
-
- cd09523
Location:598 → 662
- SAM_TAL; SAM domain of TAL subfamily
- COG4886
Location:96 → 220
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:64 → 85
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:709 → 748
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
- pfam17380
Location:289 → 505
- DUF5401; Family of unknown function (DUF5401)
-
XM_006497966.4 → XP_006498029.1 E3 ubiquitin-protein ligase LRSAM1 isoform X1
See identical proteins and their annotated locations for XP_006498029.1
- Conserved Domains (5) summary
-
- cd09523
Location:598 → 662
- SAM_TAL; SAM domain of TAL subfamily
- COG4886
Location:96 → 220
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:64 → 85
- LRR_RI; leucine-rich repeat [structural motif]
- cd16515
Location:709 → 748
- RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
- pfam17380
Location:289 → 505
- DUF5401; Family of unknown function (DUF5401)
RNA
-
XR_374086.4 RNA Sequence
-
XR_004939676.1 RNA Sequence