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    TTTY12 testis expressed transcript, Y-linked 12 [ Homo sapiens (human) ]

    Gene ID: 83867, updated on 17-Sep-2024

    Summary

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    Official Symbol
    TTTY12provided by HGNC
    Official Full Name
    testis expressed transcript, Y-linked 12provided by HGNC
    Primary source
    HGNC:HGNC:18493
    See related
    Ensembl:ENSG00000237048 AllianceGenome:HGNC:18493
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TTY11; TTY12; NCRNA00135
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See TTTY12 in Genome Data Viewer
    Location:
    Yp11.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (7804015..7810683)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (7459999..7466667)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (7672056..7678724)

    Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene testis expressed transcript, Y-linked 16 Neighboring gene raftlin, lipid raft linker 1 pseudogene 1 Neighboring gene uncharacterized LOC107987339 Neighboring gene uncharacterized LOC105377229 Neighboring gene tripartite motif containing 60 pseudogene 1, Y-linked Neighboring gene zinc finger protein 92 pseudogene 1, Y-linked

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Skaletsky H, et al. Nature, 2003 Jun 19. PMID 12815422

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • testis transcript Y 12
    • testis-specific transcript, Y-linked 12 (non-protein coding)
    • transcript Y 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_001551.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007275
      Related
      ENST00000413466.3

    2. NR_174112.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007275
      Related
      ENST00000651670.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

      Range
      7804015..7810683
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060948.1 Alternate T2T-CHM13v2.0

      Range
      7459999..7466667
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_031930.1: Suppressed sequence

      Description
      NM_031930.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.