U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PACRG-AS3 PACRG antisense RNA 3 [ Homo sapiens (human) ]

    Gene ID: 729658, updated on 17-Sep-2024

    Summary

    Official Symbol
    PACRG-AS3provided by HGNC
    Official Full Name
    PACRG antisense RNA 3provided by HGNC
    Primary source
    HGNC:HGNC:52053
    See related
    Ensembl:ENSG00000225683 AllianceGenome:HGNC:52053
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in brain (RPKM 1.3) and testis (RPKM 0.5) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See PACRG-AS3 in Genome Data Viewer
    Location:
    6q26
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (163181645..163192002, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (164545276..164555632, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (163602677..163613034, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene parkin coregulated Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:163385553-163386752 Neighboring gene ribosomal protein L34 pseudogene 15 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:163415840-163416477 Neighboring gene PACRG antisense RNA 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:163504027-163504596 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:163520272-163521085 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:163602019-163602599 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:163607166-163607736 Neighboring gene uncharacterized LOC105378095 Neighboring gene uncharacterized LOC124901548

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Clone Names

    • FLJ42835, FLJ58069

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_122120.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK311212, AL078585
      Related
      ENST00000664395.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      163181645..163192002 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      164545276..164555632 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)