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    LINC01446 long intergenic non-protein coding RNA 1446 [ Homo sapiens (human) ]

    Gene ID: 401337, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01446provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1446provided by HGNC
    Primary source
    HGNC:HGNC:50773
    See related
    Ensembl:ENSG00000205628 AllianceGenome:HGNC:50773
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GS1-179L18.1
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01446 in Genome Data Viewer
    Location:
    7p12.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (53655509..53811931, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (53817107..53973533, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (53723202..53879624, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene RN7SK pseudogene 218 Neighboring gene uncharacterized GS1-278J22.2 Neighboring gene NANOG hESC enhancer GRCh37_chr7:53671803-53672348 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:53811471-53811972 Neighboring gene RNA, U2 small nuclear 29, pseudogene Neighboring gene Rac family small GTPase 1 pseudogene 9 Neighboring gene NANOG hESC enhancer GRCh37_chr7:53902969-53903491 Neighboring gene HAUS augmin like complex subunit 6 pseudogene 3 Neighboring gene long intergenic non-protein coding RNA 2854

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Clone Names

    • FLJ45974

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038371.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK127870
      Related
      ENST00000380970.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      53655509..53811931 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      53817107..53973533 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001001707.1: Suppressed sequence

      Description
      NM_001001707.1: This RefSeq was permanently suppressed because currently sufficient data to support this transcript do not exist and the transcript is a nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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