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    UBBP1 ubiquitin B pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 7315, updated on 17-Sep-2024

    Summary

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    Official Symbol
    UBBP1provided by HGNC
    Official Full Name
    ubiquitin B pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:12464
    See related
    AllianceGenome:HGNC:12464
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See UBBP1 in Genome Data Viewer
    Location:
    2q22.1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (136329300..136330012, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (136773866..136774578, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (137086870..137087582, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11985 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16584 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16585 Neighboring gene C-X-C motif chemokine receptor 4 Neighboring gene heterogeneous nuclear ribonucleoprotein K pseudogene 2 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:136993310-136994509 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16586 Neighboring gene Sharpr-MPRA regulatory region 14513 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:137001246-137001746 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:137001747-137002247 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:137039837-137040338 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16587 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16588 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16589 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:137165304-137165804 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:137165805-137166305 Neighboring gene RN7SK pseudogene 141 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:137240685-137240943 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16591 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:137267551-137268375 Neighboring gene NANOG hESC enhancer GRCh37_chr2:137275190-137275696 Neighboring gene MPRA-validated peak3883 silencer Neighboring gene uncharacterized LOC105373633 Neighboring gene structural maintenance of chromosomes 4 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The human ubiquitin gene family: structure of a gene and pseudogenes from the Ub B subfamily. Baker RT, et al. Nucleic Acids Res, 1987 Jan 26. PMID 3029682, Free PMC Article
    2. Localization of the human UbB polyubiquitin gene to chromosome band 17p11.1-17p12. Webb GC, et al. Am J Hum Genet, 1990 Feb. PMID 2154095, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_002284.4 

      Range
      101..813
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      136329300..136330012 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      136773866..136774578 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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