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    IGSF11-AS1 IGSF11 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100506765, updated on 22-Oct-2024

    Summary

    Official Symbol
    IGSF11-AS1provided by HGNC
    Official Full Name
    IGSF11 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40777
    See related
    Ensembl:ENSG00000239877 AllianceGenome:HGNC:40777
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 12.6) See more
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    Genomic context

    See IGSF11-AS1 in Genome Data Viewer
    Location:
    3q13.32
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (118943076..118948241)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (121662821..121667985)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (118661923..118667088)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374060 Neighboring gene uncharacterized LOC124909417 Neighboring gene uncharacterized LOC105374059 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20291 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20292 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20293 Neighboring gene immunoglobulin superfamily member 11 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:118725480-118726080 Neighboring gene MPRA-validated peak4780 silencer Neighboring gene MPRA-validated peak4781 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14624 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:118763719-118764299 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:118764300-118764879 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:118839208-118839745 Neighboring gene Sharpr-MPRA regulatory region 3599 Neighboring gene testis expressed 55 Neighboring gene uroplakin 1B

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • IGSF11 antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046230.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007023, BI829854
      Related
      ENST00000477009.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      118943076..118948241
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      121662821..121667985
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)