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    LINC01981 long intergenic non-protein coding RNA 1981 [ Homo sapiens (human) ]

    Gene ID: 100996624, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01981provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1981provided by HGNC
    Primary source
    HGNC:HGNC:52809
    See related
    Ensembl:ENSG00000229243 AllianceGenome:HGNC:52809
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.2) See more
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    Genomic context

    See LINC01981 in Genome Data Viewer
    Location:
    3p24.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (27830886..27834136, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (27832990..27836240, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (27872377..27875627, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:27754223-27754908 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:27755580-27756476 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14153 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:27765995-27766869 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:27769715-27770646 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:27770647-27771576 Neighboring gene long intergenic non-protein coding RNA 2084 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:27771577-27772508 Neighboring gene eomesodermin Neighboring gene long intergenic non-protein coding RNA 1980 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:27863221-27863768 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:27862672-27863220 Neighboring gene MPRA-validated peak4580 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:27924660-27925251 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:27981407-27981999 Neighboring gene VISTA enhancer hs1557 Neighboring gene long intergenic non-protein coding RNA 1967 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:28100418-28101018 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:28101019-28101619 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14154 Neighboring gene uncharacterized LOC105377008

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_132438.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA719043, AC098973, BC037254
      Related
      ENST00000432163.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      27830886..27834136 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      27832990..27836240 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)