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    CADM3-AS1 CADM3 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100131825, updated on 17-Sep-2024

    Summary

    Official Symbol
    CADM3-AS1provided by HGNC
    Official Full Name
    CADM3 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40812
    See related
    AllianceGenome:HGNC:40812
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in brain (RPKM 50.0), placenta (RPKM 18.8) and 9 other tissues See more
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    Genomic context

    See CADM3-AS1 in Genome Data Viewer
    Location:
    1q23.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (159195985..159202422, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (158333020..158339448, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (159165775..159172212, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene absent in melanoma 2 Neighboring gene tRNA-Arg (anticodon TCT) 4-1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:159140542-159141042 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1453 Neighboring gene RNA, 5S ribosomal pseudogene 60 Neighboring gene cell adhesion molecule 3 Neighboring gene atypical chemokine receptor 1 (Duffy blood group) Neighboring gene mucosal pentraxin 1 (pseudogene)

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Bivariate genome-wide association study suggests that the DARC gene influences lean body mass and age at menarche.
    EBI GWAS Catalog

    General gene information

    Markers

    Other Names

    • CTA-134P22.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037870.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL035403

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      159195985..159202422 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      158333020..158339448 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)