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    POPDC1-AS1 POPDC1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 154442, updated on 25-Sep-2024

    Summary

    Official Symbol
    POPDC1-AS1provided by HGNC
    Official Full Name
    POPDC1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:21223
    See related
    Ensembl:ENSG00000203808 AllianceGenome:HGNC:21223
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    BVES-AS1; C6orf112; bA99L11.2
    Expression
    Biased expression in testis (RPKM 4.5), heart (RPKM 0.8) and 3 other tissues See more
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    Genomic context

    See POPDC1-AS1 in Genome Data Viewer
    Location:
    6q21
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (105137687..105169945)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (106313449..106345694)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (105585562..105617820)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene lin-28 homolog B Neighboring gene RNA, U6 small nuclear 1106, pseudogene Neighboring gene popeye domain cAMP effector 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17426 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17427 Neighboring gene popeye domain cAMP effector 3 Neighboring gene MPRA-validated peak5993 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:105681181-105681682 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:105681683-105682182 Neighboring gene ribosomal protein L7a pseudogene 35 Neighboring gene prolyl endopeptidase Neighboring gene ribosomal protein L35 pseudogene 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study of severity in multiple sclerosis.
    EBI GWAS Catalog

    General gene information

    Markers

    Other Names

    • BVES antisense RNA 1 (non-protein coding)

    Clone Names

    • DKFZp434F2226

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037157.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137368, AL359709
      Related
      ENST00000369122.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      105137687..105169945
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      106313449..106345694
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)