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    MIR205HG MIR205 host gene [ Homo sapiens (human) ]

    Gene ID: 642587, updated on 2-Nov-2024

    Summary

    Official Symbol
    MIR205HGprovided by HGNC
    Official Full Name
    MIR205 host geneprovided by HGNC
    Primary source
    HGNC:HGNC:43562
    See related
    Ensembl:ENSG00000230937 AllianceGenome:HGNC:43562
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LEADR; NPC-A-5; LINC00510
    Summary
    Predicted to be involved in several processes, including hormone biosynthetic process; prolactin metabolic process; and regulation of DNA-binding transcription factor activity. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in skin (RPKM 61.0), esophagus (RPKM 17.9) and 4 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See MIR205HG in Genome Data Viewer
    Location:
    1q32.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (209428820..209432549)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (208675627..208679345)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (209602165..209605894)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1696 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:209538955-209539455 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:209546699-209547200 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:209547201-209547700 Neighboring gene long intergenic non-protein coding RNA 1698 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:209556921-209557668 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:209557669-209558417 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:209570036-209570918 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:209572682-209573562 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:209576956-209578155 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:209601163-209602086 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:209606319-209606916 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:209606917-209607516 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:209608115-209608712 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:209621349-209622029 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:209622030-209622710 Neighboring gene microRNA 205 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:209625434-209626113 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:209626672-209627311 Neighboring gene uncharacterized LOC105372898 Neighboring gene MPRA-validated peak673 silencer Neighboring gene uncharacterized LOC105372899

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Other Names

    • Long Epithelial Alu-interacting Differentiation-related RNA
    • MIR205 host gene (non-protein coding)
    • long intergenic non-protein coding RNA 510

    Clone Names

    • FLJ11346

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_145433.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL035408, BU676846, CB126809, CN401917, DB239228
    2. NR_145434.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL035408, BU676846, CB126809, CV575609
      Related
      ENST00000830947.1
    3. NR_145435.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL035408, BM695572, BU676846, CB126809, CV575609
      Related
      ENST00000431096.7
    4. NR_145436.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BU676846, CB126809, CV575609, H25979
      Related
      ENST00000830951.1
    5. NR_145437.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL035408
      Related
      ENST00000366437.8

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      209428820..209432549
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      208675627..208679345
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)