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    FAM86DP family with sequence similarity 86 member D, pseudogene [ Homo sapiens (human) ]

    Gene ID: 692099, updated on 17-Sep-2024

    Summary

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    Official Symbol
    FAM86DPprovided by HGNC
    Official Full Name
    family with sequence similarity 86 member D, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:32659
    See related
    Ensembl:ENSG00000291223 AllianceGenome:HGNC:32659
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FAM86D
    Expression
    Ubiquitous expression in ovary (RPKM 4.4), endometrium (RPKM 3.2) and 25 other tissues See more
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    Genomic context

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    See FAM86DP in Genome Data Viewer
    Location:
    3p12.3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (75421552..75435115, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (75473914..75487479, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (75470703..75484266, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905452 Neighboring gene EVA1C pseudogene 5 Neighboring gene LSP1 pseudogene 2 Neighboring gene ALG1 like 6, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:75474297-75474798 Neighboring gene Sharpr-MPRA regulatory region 2645 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20103 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14535 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20104 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14536 Neighboring gene long intergenic non-protein coding RNA 2018 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:75493298-75493842 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 2 Neighboring gene small nuclear ribonucleoprotein polypeptide C pseudogene 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. The DNA sequence, annotation and analysis of human chromosome 3. Muzny DM, et al. Nature, 2006 Apr 27. PMID 16641997
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024241.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC139453, BC016686, BC068011, DA753838
      Related
      ENST00000459803.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      75421552..75435115 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_021159989.1 Reference GRCh38.p14 PATCHES

      Range
      68199..81762 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      75473914..75487479 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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