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    GBP1P1 guanylate binding protein 1 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 400759, updated on 17-Sep-2024

    Summary

    Official Symbol
    GBP1P1provided by HGNC
    Official Full Name
    guanylate binding protein 1 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:39561
    See related
    Ensembl:ENSG00000290525 AllianceGenome:HGNC:39561
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LIMIT
    Expression
    Ubiquitous expression in lung (RPKM 3.1), appendix (RPKM 2.6) and 24 other tissues See more
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    Genomic context

    See GBP1P1 in Genome Data Viewer
    Location:
    1p22.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (89407679..89424934)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (89250939..89268185)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (89873238..89890493)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene guanylate binding protein family member 6 Neighboring gene calpain small subunit 1 pseudogene 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:89883292-89883872 Neighboring gene uncharacterized LOC105378844 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:89938329-89938830 Neighboring gene MPRA-validated peak312 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1053 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:89991413-89991914 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:89991915-89992416 Neighboring gene leucine rich repeat containing 8 VRAC subunit B Neighboring gene uncharacterized LOC124904216

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Other Names

    • guanylate binding protein 1, interferon-inducible pseudogene 1
    • interferon-induced guanylate-binding protein 1 pseudogene
    • lncRNA inducing MHC-I and immunogenicity of tumour

    Clone Names

    • FLJ17004

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003133.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK309962, AL691464
      Related
      ENST00000513638.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      89407679..89424934
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      89250939..89268185
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)