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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001190259.2 → NP_001177188.1 germinal center-associated signaling and motility protein isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. This results in a longer protein (isoform 3), compared to isoform 1.
- Source sequence(s)
-
AC128688, AY212246, BM456595
- Consensus CDS
-
CCDS54622.1
- UniProtKB/TrEMBL
-
B2R8H0
- Related
- ENSP00000419485.1, ENST00000484193.5
- Conserved Domains (1) summary
-
- pfam15666
Location:73 → 155
- HGAL; Germinal center-associated lymphoma
-
NM_001190260.2 → NP_001177189.1 germinal center-associated signaling and motility protein isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks in-frame exon in the 5' coding region, compared to variant 1. This results in a shorter protein (isoform 4), compared to isoform 1.
- Source sequence(s)
-
AC128688, AY212246, BP224611
- Consensus CDS
-
CCDS54621.1
- UniProtKB/TrEMBL
-
B2R8H0
- Related
- ENSP00000420603.2, ENST00000460387.6
- Conserved Domains (1) summary
-
- pfam15666
Location:56 → 138
- HGAL; Germinal center-associated lymphoma
-
NM_152785.5 → NP_689998.1 germinal center-associated signaling and motility protein isoform 1
See identical proteins and their annotated locations for NP_689998.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform 1.
- Source sequence(s)
-
AC128688, AF521911, AY212246
- Consensus CDS
-
CCDS2964.1
- UniProtKB/Swiss-Prot
- C9JD17, C9JUG6, Q8N6F7
- UniProtKB/TrEMBL
-
B2R8H0
- Related
- ENSP00000309487.4, ENST00000308910.9
- Conserved Domains (1) summary
-
- pfam15666
Location:71 → 153
- HGAL; Germinal center-associated lymphoma
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
112120839..112133248 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_024453437.2 → XP_024309205.1 germinal center-associated signaling and motility protein isoform X2
- UniProtKB/TrEMBL
-
B2R8H0
- Conserved Domains (1) summary
-
- pfam15666
Location:74 → 154
- HGAL; Germinal center-associated lymphoma
-
XM_011512627.4 → XP_011510929.1 germinal center-associated signaling and motility protein isoform X1
- UniProtKB/TrEMBL
-
B2R8H0
- Conserved Domains (1) summary
-
- pfam15666
Location:76 → 156
- HGAL; Germinal center-associated lymphoma
-
XM_024453438.2 → XP_024309206.1 germinal center-associated signaling and motility protein isoform X3
- UniProtKB/TrEMBL
- A0A2R8Y525, A0A2R8Y6D6, C9IY73, C9JY41
- Conserved Domains (1) summary
-
- pfam15666
Location:69 → 149
- HGAL; Germinal center-associated lymphoma
-
XM_011512629.3 → XP_011510931.1 germinal center-associated signaling and motility protein isoform X4
See identical proteins and their annotated locations for XP_011510931.1
- UniProtKB/TrEMBL
- A0A2R8Y525, A0A2R8Y6D6, C9IY73, C9JY41
- Related
- ENSP00000418849.2, ENST00000487901.2
- Conserved Domains (1) summary
-
- pfam15666
Location:57 → 137
- HGAL; Germinal center-associated lymphoma
-
XM_011512630.3 → XP_011510932.1 germinal center-associated signaling and motility protein isoform X4
See identical proteins and their annotated locations for XP_011510932.1
- UniProtKB/TrEMBL
- A0A2R8Y525, A0A2R8Y6D6, C9IY73, C9JY41
- Related
- ENSP00000419913.2, ENST00000488580.6
- Conserved Domains (1) summary
-
- pfam15666
Location:57 → 137
- HGAL; Germinal center-associated lymphoma
Reference GRCh38.p14 PATCHES
Genomic
-
NW_019805492.1 Reference GRCh38.p14 PATCHES
- Range
-
4129..16538 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054332387.1 → XP_054188362.1 germinal center-associated signaling and motility protein isoform X2
-
XM_054332386.1 → XP_054188361.1 germinal center-associated signaling and motility protein isoform X1
-
XM_054332388.1 → XP_054188363.1 germinal center-associated signaling and motility protein isoform X3
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
114841954..114854363 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054346011.1 → XP_054201986.1 germinal center-associated signaling and motility protein isoform X2
-
XM_054346010.1 → XP_054201985.1 germinal center-associated signaling and motility protein isoform X1
-
XM_054346012.1 → XP_054201987.1 germinal center-associated signaling and motility protein isoform X3
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001008756.1: Suppressed sequence
- Description
- NM_001008756.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.