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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001145446.2 → NP_001138918.1  zinc finger protein 200 isoform 3
See identical proteins and their annotated locations for NP_001138918.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and uses an alternate in-frame acceptor splice site at the ultimate coding exon compared to transcript variant 1. This results in an isoform (3) missing 1 aa compared to isoform 1. Variants 4,5 and 6 encode the same isoform.
- Source sequence(s)
-
AA338573, BC054005, DB031650, Y14443
- Consensus CDS
-
CCDS45395.1
- UniProtKB/Swiss-Prot
-
P98182
- Related
- ENSP00000380080.4, ENST00000396871.8
- Conserved Domains (4) summary
-
- COG5048
Location:253 → 394
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:253 → 273
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:251 → 273
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:265 → 290
- zf-H2C2_2; Zinc-finger double domain
-
NM_001145447.2 → NP_001138919.1  zinc finger protein 200 isoform 3
See identical proteins and their annotated locations for NP_001138919.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) uses an alternate in-frame acceptor splice site at the ultimate coding exon compared to transcript variant 1. This results in an isoform (3) missing 1 aa compared to isoform 1. Variants 4,5 and 6 encode the same isoform.
- Source sequence(s)
-
AA338573, AK056010, BC032575
- Consensus CDS
-
CCDS45395.1
- UniProtKB/Swiss-Prot
-
P98182
- UniProtKB/TrEMBL
-
B3KP91
- Related
- ENSP00000380079.4, ENST00000396870.8
- Conserved Domains (4) summary
-
- COG5048
Location:253 → 394
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:253 → 273
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:251 → 273
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:265 → 290
- zf-H2C2_2; Zinc-finger double domain
-
NM_001145448.2 → NP_001138920.1  zinc finger protein 200 isoform 3
See identical proteins and their annotated locations for NP_001138920.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR and uses an alternate in-frame acceptor splice site at the ultimate coding exon compared to transcript variant 1. This results in an isoform (3) missing 1 aa compared to isoform 1. Variants 4,5 and 6 encode the same isoform.
- Source sequence(s)
-
AA338573, AK315036, DA757518, Y14443
- Consensus CDS
-
CCDS45395.1
- UniProtKB/Swiss-Prot
-
P98182
- Related
- ENSP00000458508.1, ENST00000575948.1
- Conserved Domains (4) summary
-
- COG5048
Location:253 → 394
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:253 → 273
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:251 → 273
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:265 → 290
- zf-H2C2_2; Zinc-finger double domain
-
NM_003454.4 → NP_003445.2  zinc finger protein 200 isoform 1
See identical proteins and their annotated locations for NP_003445.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1). Both variants 1 and 2 encode the same isoform.
- Source sequence(s)
-
AA338573, AK056010, BC032575
- Consensus CDS
-
CCDS10497.1
- UniProtKB/Swiss-Prot
- D3DUB7, D3DUB8, O15361, P98182, Q5XKM5, Q7Z5V1
- Related
- ENSP00000395723.3, ENST00000431561.7
- Conserved Domains (3) summary
-
- COG5048
Location:254 → 395
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:254 → 274
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:266 → 291
- zf-H2C2_2; Zinc-finger double domain
-
NM_198087.3 → NP_932353.1  zinc finger protein 200 isoform 2
See identical proteins and their annotated locations for NP_932353.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and uses an alternate in-frame acceptor splice site at the penultimate coding exon compared to transcript variant 1. This results in an isoform (2) missing 1 aa compared to isoform 1.
- Source sequence(s)
-
AA338573, DB031650, Y14443
- Consensus CDS
-
CCDS42112.1
- UniProtKB/Swiss-Prot
-
P98182
- Related
- ENSP00000380077.3, ENST00000396868.7
- Conserved Domains (4) summary
-
- COG5048
Location:253 → 394
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:253 → 273
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:251 → 273
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:265 → 290
- zf-H2C2_2; Zinc-finger double domain
-
NM_198088.3 → NP_932354.1  zinc finger protein 200 isoform 1
See identical proteins and their annotated locations for NP_932354.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to transcript variant 1. Both variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AA338573, AF060866, DA757518, Y14443
- Consensus CDS
-
CCDS10497.1
- UniProtKB/Swiss-Prot
- D3DUB7, D3DUB8, O15361, P98182, Q5XKM5, Q7Z5V1
- Related
- ENSP00000405786.2, ENST00000414144.7
- Conserved Domains (3) summary
-
- COG5048
Location:254 → 395
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:254 → 274
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:266 → 291
- zf-H2C2_2; Zinc-finger double domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000016.10Â Reference GRCh38.p14 Primary Assembly
- Range
-
3222325..3235158 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006720941.3 → XP_006721004.1  zinc finger protein 200 isoform X1
See identical proteins and their annotated locations for XP_006721004.1
- UniProtKB/Swiss-Prot
- D3DUB7, D3DUB8, O15361, P98182, Q5XKM5, Q7Z5V1
- Conserved Domains (3) summary
-
- COG5048
Location:254 → 395
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:254 → 274
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam13465
Location:266 → 291
- zf-H2C2_2; Zinc-finger double domain
-
XM_047434596.1 → XP_047290552.1  zinc finger protein 200 isoform X1
- UniProtKB/Swiss-Prot
- D3DUB7, D3DUB8, O15361, P98182, Q5XKM5, Q7Z5V1
-
XM_047434599.1 → XP_047290555.1  zinc finger protein 200 isoform X2
-
XM_047434597.1 → XP_047290553.1  zinc finger protein 200 isoform X1
- UniProtKB/Swiss-Prot
- D3DUB7, D3DUB8, O15361, P98182, Q5XKM5, Q7Z5V1
-
XM_047434600.1 → XP_047290556.1  zinc finger protein 200 isoform X2
-
XM_047434598.1 → XP_047290554.1  zinc finger protein 200 isoform X1
- UniProtKB/Swiss-Prot
- D3DUB7, D3DUB8, O15361, P98182, Q5XKM5, Q7Z5V1
RNA
-
XR_007064908.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060940.1Â Alternate T2T-CHM13v2.0
- Range
-
3249433..3263296 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054313857.1 → XP_054169832.1  zinc finger protein 200 isoform X1
- UniProtKB/Swiss-Prot
- D3DUB7, D3DUB8, O15361, P98182, Q5XKM5, Q7Z5V1
-
XM_054313867.1 → XP_054169842.1  zinc finger protein 200 isoform X2
-
XM_054313854.1 → XP_054169829.1  zinc finger protein 200 isoform X1
- UniProtKB/Swiss-Prot
- D3DUB7, D3DUB8, O15361, P98182, Q5XKM5, Q7Z5V1
-
XM_054313861.1 → XP_054169836.1  zinc finger protein 200 isoform X2
-
XM_054313866.1 → XP_054169841.1  zinc finger protein 200 isoform X2
-
XM_054313868.1 → XP_054169843.1  zinc finger protein 200 isoform X2
-
XM_054313863.1 → XP_054169838.1  zinc finger protein 200 isoform X2
-
XM_054313862.1 → XP_054169837.1  zinc finger protein 200 isoform X2
-
XM_054313856.1 → XP_054169831.1  zinc finger protein 200 isoform X1
- UniProtKB/Swiss-Prot
- D3DUB7, D3DUB8, O15361, P98182, Q5XKM5, Q7Z5V1
-
XM_054313852.1 → XP_054169827.1  zinc finger protein 200 isoform X1
- UniProtKB/Swiss-Prot
- D3DUB7, D3DUB8, O15361, P98182, Q5XKM5, Q7Z5V1
-
XM_054313855.1 → XP_054169830.1  zinc finger protein 200 isoform X1
- UniProtKB/Swiss-Prot
- D3DUB7, D3DUB8, O15361, P98182, Q5XKM5, Q7Z5V1
-
XM_054313860.1 → XP_054169835.1  zinc finger protein 200 isoform X1
- UniProtKB/Swiss-Prot
- D3DUB7, D3DUB8, O15361, P98182, Q5XKM5, Q7Z5V1
-
XM_054313864.1 → XP_054169839.1  zinc finger protein 200 isoform X2
-
XM_054313865.1 → XP_054169840.1  zinc finger protein 200 isoform X2
-
XM_054313858.1 → XP_054169833.1  zinc finger protein 200 isoform X1
- UniProtKB/Swiss-Prot
- D3DUB7, D3DUB8, O15361, P98182, Q5XKM5, Q7Z5V1
-
XM_054313859.1 → XP_054169834.1  zinc finger protein 200 isoform X1
- UniProtKB/Swiss-Prot
- D3DUB7, D3DUB8, O15361, P98182, Q5XKM5, Q7Z5V1
-
XM_054313853.1 → XP_054169828.1  zinc finger protein 200 isoform X1
- UniProtKB/Swiss-Prot
- D3DUB7, D3DUB8, O15361, P98182, Q5XKM5, Q7Z5V1
RNA
-
XR_008484733.1 RNA Sequence