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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_023278.1 RefSeqGene
- Range
-
5221..55039
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001300928.2 → NP_001287857.1 sorting nexin-3 isoform c
See identical proteins and their annotated locations for NP_001287857.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an exon in the 3' coding region, compared to variant 1, which results in a frameshift and a protein (isoform c) with a shorter and distinct C-terminus, compared to isoform a.
- Source sequence(s)
-
AI921483, BQ432490, CA442762, CN422502, HY156437
- Conserved Domains (1) summary
-
- cl02563
Location:28 → 86
- PX_domain; The Phox Homology domain, a phosphoinositide binding module
-
NM_001300929.2 → NP_001287858.1 sorting nexin-3 isoform d
See identical proteins and their annotated locations for NP_001287858.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an in-frame portion of the first coding exon, compared to variant 1. It encodes isoform d, which is shorter than isoform a.
- Source sequence(s)
-
AI921483, BQ432490, CA442762, CN422502, HY023148
- Consensus CDS
-
CCDS75501.1
- UniProtKB/Swiss-Prot
-
O60493
- Related
- ENSP00000296991.7, ENST00000349379.5
- Conserved Domains (1) summary
-
- cl02563
Location:12 → 128
- PX_domain; The Phox Homology domain, a phosphoinositide binding module
-
NM_003795.6 → NP_003786.1 sorting nexin-3 isoform a
See identical proteins and their annotated locations for NP_003786.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
- Source sequence(s)
-
AF034546, BQ432490, CA442762, HY023148
- Consensus CDS
-
CCDS5064.1
- UniProtKB/Swiss-Prot
- A8K0B1, E1P5E4, E1P5E5, O60493, O60718, Q4TT29, Q4TT31, Q5JXJ7, Q5JXJ8, Q96AP9, Q9C0J5, Q9NU45
- Related
- ENSP00000230085.8, ENST00000230085.13
- Conserved Domains (1) summary
-
- cd07293
Location:28 → 150
- PX_SNX3; The phosphoinositide binding Phox Homology domain of Sorting Nexin 3
-
NM_152827.4 → NP_690040.1 sorting nexin-3 isoform b
See identical proteins and their annotated locations for NP_690040.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an in-frame coding exon, compared to variant 1. It encodes isoform b, also known as SNX3A, which is shorter than isoform a.
- Source sequence(s)
-
AB047360, BQ432490, CA442762, HY023148
- Consensus CDS
-
CCDS5065.1
- UniProtKB/Swiss-Prot
-
O60493
- Related
- ENSP00000401779.2, ENST00000426155.6
- Conserved Domains (1) summary
-
- cl02563
Location:28 → 118
- PX_domain; The Phox Homology domain, a phosphoinositide binding module
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000006.12 Reference GRCh38.p14 Primary Assembly
- Range
-
108211222..108261040 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060930.1 Alternate T2T-CHM13v2.0
- Range
-
109388338..109438159 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_152828.2: Suppressed sequence
- Description
- NM_152828.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein, and because the transcript is a nonsense-mediated mRNA decay (NMD) candidate.