RNU6ATAC RNA, U6atac small nuclear [Homo sapiens (human)] - Gene

Summary

Official Symbol: RNU6ATACprovided by HGNC
Official Full Name: RNA, U6atac small nuclearprovided by HGNC
Primary source: HGNC:HGNC:34017
See related: Ensembl:ENSG00000221676 MIM:601429; AllianceGenome:HGNC:34017
Gene type: snRNA
RefSeq status: PROVISIONAL
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: U6ATAC; RNU6ATAC1
Summary: Predicted to enable U4atac snRNA binding activity and pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition and spliceosomal tri-snRNP complex assembly. Predicted to be part of U6atac snRNP. [provided by Alliance of Genome Resources, Oct 2024]
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Genomic context

Location:: 9q34.2

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	9	NC_000009.12 (134164440..134164564, complement)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	9	NC_060933.1 (146378167..146378291, complement)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	9	NC_000009.11 (137029562..137029686, complement)

Chromosome 9 - NC_000009.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Study shows a detailed structure-function analysis and requirement of a substructure of U6atac 3' stem-loop in U12-dependent in vivo splicing. Also, the distal 3' stem-loop of U6atac recognizes the C-terminal RNA recognition motif of p65, a U12 snRNA binding protein.
Title: U6atac snRNA stem-loop interacts with U12 p65 RNA binding protein and is functionally interchangeable with the U12 apical stem-loop III.

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Other Names

RNA, U6atac small nuclear (U12-dependent splicing)
RNA, U6atac small nuclear 1

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables U4atac snRNA binding	IEA Inferred from Electronic Annotation more info
enables pre-mRNA 5'-splice site binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in mRNA 5'-splice site recognition	IEA Inferred from Electronic Annotation more info
involved_in spliceosomal tri-snRNP complex assembly	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of U6atac snRNP	IEA Inferred from Electronic Annotation more info

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.