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    FKBP9P1 FKBP prolyl isomerase 9 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 360132, updated on 2-Nov-2024

    Summary

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    Official Symbol
    FKBP9P1provided by HGNC
    Official Full Name
    FKBP prolyl isomerase 9 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:23568
    See related
    Ensembl:ENSG00000291029 AllianceGenome:HGNC:23568
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FKBP9L
    Summary
    Predicted to enable calcium ion binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be located in endoplasmic reticulum. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in placenta (RPKM 7.0), gall bladder (RPKM 6.2) and 24 other tissues See more
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    Genomic context

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    See FKBP9P1 in Genome Data Viewer
    Location:
    7p11.2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (55681074..55704567, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (55841330..55864824, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (55748767..55772260, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene tubulin beta class I pseudogene 6 Neighboring gene NANOG hESC enhancer GRCh37_chr7:55725366-55725867 Neighboring gene ankyrin repeat domain containing 26 pseudogene Neighboring gene RNA, U6 small nuclear 389, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr7:55773698-55774205 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:55774944-55776143 Neighboring gene FKBP prolyl isomerase 10 pseudogene Neighboring gene SUMO2 pseudogene 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Silencing novel long non-coding RNA FKBP9P1 represses malignant progression and inhibits PI3K/AKT signaling of head and neck squamous cell carcinoma in vitro. Yang YF, et al. Chin Med J (Engl), 2020 Sep 5. PMID 32769488, Free PMC Article
    2. Rewiring of the Human Mitochondrial Interactome during Neuronal Reprogramming Reveals Regulators of the Respirasome and Neurogenesis. Moutaoufik MT, et al. iScience, 2019 Sep 27. PMID 31536960, Free PMC Article
    3. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074
    4. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Silencing novel long non-coding RNA FKBP9P1 represses malignant progression and inhibits PI3K/AKT signaling of head and neck squamous cell carcinoma in vitro.
      Title: Silencing novel long non-coding RNA FKBP9P1 represses malignant progression and inhibits PI3K/AKT signaling of head and neck squamous cell carcinoma in vitro.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • FK506 binding protein 9 pseudogene 1
    • FK506 binding protein 9-like

    Clone Names

    • MGC20531

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003949.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks an alternate 5' exon but includes 3 extra alternate exons at the 5' end, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the signal peptide coding sequence, found in the related functional gene.
      Source sequence(s)
      BC011872, BM041005

    2. NR_027339.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. This variant is represented as non-coding because it lacks a large portion of the coding region, including the signal peptide coding sequence, found in the related functional gene.
      Source sequence(s)
      AK312981, BC011872, BM014562

    3. NR_027340.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate 5' exon and an alternate splice site, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the signal peptide coding sequence, found in the related functional gene.
      Source sequence(s)
      AK312981, BC011872

    4. NR_027342.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate 5' exon, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the signal peptide coding sequence, found in the related functional gene.
      Source sequence(s)
      BC011872
      Related
      ENST00000455909.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      55681074..55704567 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      55841330..55864824 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_182827.1: Suppressed sequence

      Description
      NM_182827.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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