U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    HECW1-IT1 HECW1 intronic transcript 1 [ Homo sapiens (human) ]

    Gene ID: 100127950, updated on 17-Sep-2024

    Summary

    Official Symbol
    HECW1-IT1provided by HGNC
    Official Full Name
    HECW1 intronic transcript 1provided by HGNC
    Primary source
    HGNC:HGNC:41465
    See related
    Ensembl:ENSG00000181211 AllianceGenome:HGNC:41465
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See HECW1-IT1 in Genome Data Viewer
    Location:
    7p14.1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (43117896..43163187)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (43276078..43321371)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (43157495..43202786)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375253 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25906 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25907 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:43086257-43086757 Neighboring gene Sharpr-MPRA regulatory region 4044 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:43098985-43099585 Neighboring gene uncharacterized LOC107986790 Neighboring gene Sharpr-MPRA regulatory region 5110 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:43117009-43117801 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:43147486-43148000 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:43157882-43159081 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:43178144-43178740 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25908 Neighboring gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 Neighboring gene microRNA 3943 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:43236783-43237295 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:43237296-43237807 Neighboring gene RNA, U7 small nuclear 35 pseudogene Neighboring gene RNA, U6 small nuclear 575, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Other Names

    • HECW1 intronic transcript 1 (non-protein coding)

    Clone Names

    • AC004455.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135295.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004455, AC005537
      Related
      ENST00000322220.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      43117896..43163187
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      43276078..43321371
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)