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    SEPTIN7P13 septin 7 pseudogene 13 [ Homo sapiens (human) ]

    Gene ID: 100287497, updated on 22-Oct-2024

    Summary

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    Official Symbol
    SEPTIN7P13provided by HGNC
    Official Full Name
    septin 7 pseudogene 13provided by HGNC
    Primary source
    HGNC:HGNC:55092
    See related
    Ensembl:ENSG00000290989 AllianceGenome:HGNC:55092
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in prostate (RPKM 1.5), testis (RPKM 1.4) and 24 other tissues See more
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    Genomic context

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    See SEPTIN7P13 in Genome Data Viewer
    Location:
    1q42.11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (223992730..224033859)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (223182482..223223567)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (224180432..224221561)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:224136303-224136802 Neighboring gene general transcription factor IIi pseudogene 20 Neighboring gene capicua transcriptional repressor pseudogene 5 Neighboring gene RNA, U6 small nuclear 1319, pseudogene Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:224180107-224180730 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:224180731-224181352 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:224199262-224199956 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:224199957-224200650 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2593 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2594 Neighboring gene uncharacterized LOC105373061 Neighboring gene uncharacterized LOC105373056 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2595 Neighboring gene RN7SK pseudogene 49

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • FLJ23183, FLJ42980

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_136590.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC138393, DA132394
      Related
      ENST00000782406.1

    2. NR_136591.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC138393, AK026836, AK124970, DA132394, DB083170
      Related
      ENST00000782405.1

    3. NR_136592.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC138393, AK026836, AK124970, BX281887, DA229030, DB083170
      Related
      ENST00000449219.3

    4. NR_136593.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC138393, DA132394

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      223992730..224033859
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      223182482..223223567
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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