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    nhr-98 NR LBD domain-containing protein;Nuclear Hormone Receptor family [ Caenorhabditis elegans ]

    Gene ID: 178568, updated on 2-Nov-2024

    Summary

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    Official Symbol
    nhr-98
    Official Full Name
    NR LBD domain-containing protein;Nuclear Hormone Receptor family
    Primary source
    WormBase:WBGene00003688
    Locus tag
    CELE_M02H5.6
    See related
    AllianceGenome:WB:WBGene00003688
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is expressed in pharynx. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See nhr-98 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    10
    Sequence:
    Chromosome: V; NC_003283.11 (453869..456958)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene 30S ribosomal protein S15;GTP cyclohydrolase Neighboring gene Nuclear Hormone Receptor family Neighboring gene Nuclear Hormone Receptor family Neighboring gene NR LBD domain-containing protein;Nuclear Hormone Receptor family Neighboring gene Nuclear Hormone Receptor family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptional regulation. Okkema PG, et al. WormBook, 2005 Dec 23. PMID 18050428, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    NR LBD domain-containing protein;Nuclear Hormone Receptor family
    NP_001300155.1
    • Partially confirmed by transcript evidence
    NP_001300157.1
    • Confirmed by transcript evidence
    NP_001360400.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      453869..456958
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001372992.3 → NP_001360400.1  Nuclear Hormone Receptor family [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q966I0
      UniProtKB/TrEMBL
      A0A0K3AV12
      Conserved Domains (2) summary
      smart00399
      Location:24 → 93
      ZnF_C4; c4 zinc finger in nuclear hormone receptors
      pfam00104
      Location:181 → 398
      Hormone_recep; Ligand-binding domain of nuclear hormone receptor

    2. NM_001313226.3 → NP_001300155.1  Nuclear Hormone Receptor family [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q966I0
      UniProtKB/TrEMBL
      A0A0K3ASR1
      Conserved Domains (2) summary
      smart00399
      Location:63 → 132
      ZnF_C4; c4 zinc finger in nuclear hormone receptors
      pfam00104
      Location:220 → 430
      Hormone_recep; Ligand-binding domain of nuclear hormone receptor

    3. NM_001313228.3 → NP_001300157.1  NR LBD domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AS87
      Conserved Domains (1) summary
      pfam00104
      Location:3 → 90
      Hormone_recep; Ligand-binding domain of nuclear hormone receptor

    RNA

    1. NR_132478.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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