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    cnc-5 CaeNaCin (Caenorhabditis bacteriocin) [ Caenorhabditis elegans ]

    Gene ID: 187729, updated on 2-Nov-2024

    Summary

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    Official Symbol
    cnc-5
    Official Full Name
    CaeNaCin (Caenorhabditis bacteriocin)
    Primary source
    WormBase:WBGene00000559
    Locus tag
    CELE_R09B5.10
    See related
    AllianceGenome:WB:WBGene00000559
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in defense response to fungus and innate immune response. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See cnc-5 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    2
    Sequence:
    Chromosome: V; NC_003283.11 (1445381..1445832)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene CaeNaCin (Caenorhabditis bacteriocin) Neighboring gene CaeNaCin (Caenorhabditis bacteriocin) Neighboring gene CaeNaCin (Caenorhabditis bacteriocin) Neighboring gene CaeNaCin (Caenorhabditis bacteriocin)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Neuroimmune regulation of antimicrobial peptide expression by a noncanonical TGF-beta signaling pathway in Caenorhabditis elegans epidermis. Zugasti O, et al. Nat Immunol, 2009 Mar. PMID 19198592
    2. TLR-independent control of innate immunity in Caenorhabditis elegans by the TIR domain adaptor protein TIR-1, an ortholog of human SARM. Couillault C, et al. Nat Immunol, 2004 May. PMID 15048112
    3. Innate Immunity Promotes Sleep through Epidermal Antimicrobial Peptides. Sinner MP, et al. Curr Biol, 2021 Feb 8. PMID 33259791
    4. Development of a transcription-based bioanalytical tool to quantify the toxic potencies of hydrophilic compounds in water using the nematode Caenorhabditis elegans. Karengera A, et al. Ecotoxicol Environ Saf, 2021 Dec 20. PMID 34700171
    5. Evolution of the innate immune system: the worm perspective. Schulenburg H, et al. Immunol Rev, 2004 Apr. PMID 15199953

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in innate immune response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CaeNaCin (Caenorhabditis bacteriocin)
    NP_503415.1
    • Product from WormBase gene class cnc;
      Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      1445381..1445832
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_071014.1 → NP_503415.1  CaeNaCin (Caenorhabditis bacteriocin) [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_503415.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O44614
    Nucleotide Protein
    Heading Accession and Version

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