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    cey-4 CSD domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 176516, updated on 2-Nov-2024

    Summary

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    Official Symbol
    cey-4
    Official Full Name
    CSD domain-containing protein
    Primary source
    WormBase:WBGene00000475
    Locus tag
    CELE_Y39A1C.3
    See related
    AllianceGenome:WB:WBGene00000475
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Enables ribonucleoprotein complex binding activity. Predicted to be involved in regulation of gene expression. Part of ribonucleoprotein complex. Is expressed in germ cell; germ line; and somatic cell. Orthologous to human YBX1 (Y-box binding protein 1) and YBX2 (Y-box binding protein 2). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See cey-4 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Sequence:
    Chromosome: III; NC_003281.10 (10866946..10868703, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Transmembrane inner ear Neighboring gene HECT domain-containing protein Neighboring gene Vps54_N domain-containing protein Neighboring gene Lgl_C domain-containing protein Neighboring gene CUB domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide analysis of GLD-1-mediated mRNA regulation suggests a role in mRNA storage. Scheckel C, et al. PLoS Genet, 2012 May. PMID 22693456, Free PMC Article
    2. A conserved RNA-protein complex component involved in physiological germline apoptosis regulation in C. elegans. Boag PR, et al. Development, 2005 Nov. PMID 16221731
    3. Systemic regulation of mitochondria by germline proteostasis prevents protein aggregation in the soma of C. elegans. Calculli G, et al. Sci Adv, 2021 Jun. PMID 34172445, Free PMC Article
    4. Caenorhabditis elegans genomic response to soil bacteria predicts environment-specific genetic effects on life history traits. Coolon JD, et al. PLoS Genet, 2009 Jun. PMID 19503598, Free PMC Article
    5. Identification of proteins and miRNAs that specifically bind an mRNA in vivo. Theil K, et al. Nat Commun, 2019 Sep 16. PMID 31527589, Free PMC Article

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables nucleic acid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ribonucleoprotein complex binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of ribonucleoprotein complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CSD domain-containing protein
    NP_499393.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      10866946..10868703 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_066992.6 → NP_499393.1  CSD domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_499393.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EDV3
      Conserved Domains (1) summary
      pfam00313
      Location:89 → 162
      CSD; 'Cold-shock' DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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