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    LINC00964 long intergenic non-protein coding RNA 964 [ Homo sapiens (human) ]

    Gene ID: 157381, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00964provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 964provided by HGNC
    Primary source
    HGNC:HGNC:27226
    See related
    Ensembl:ENSG00000249816 AllianceGenome:HGNC:27226
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 5.0), prostate (RPKM 3.0) and 3 other tissues See more
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    Genomic context

    See LINC00964 in Genome Data Viewer
    Location:
    8q24.13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (124942008..124951095)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (126075510..126084597)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (125954250..125963337)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene MRS2 pseudogene 1 Neighboring gene uncharacterized LOC105375742 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:125968524-125969723 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:125975481-125976236 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27896 Neighboring gene zinc finger protein 572 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27897 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19516 Neighboring gene SQLE divergent transcript

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027321.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC043249, DB071196
      Related
      ENST00000510897.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      124942008..124951095
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      126075510..126084597
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)