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    YEATS2 YEATS domain containing 2 [ Homo sapiens (human) ]

    Gene ID: 55689, updated on 17-Jun-2024

    Summary

    Official Symbol
    YEATS2provided by HGNC
    Official Full Name
    YEATS domain containing 2provided by HGNC
    Primary source
    HGNC:HGNC:25489
    See related
    Ensembl:ENSG00000163872 MIM:613373; AllianceGenome:HGNC:25489
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FAME4
    Summary
    Summary: The protein encoded by this gene is a scaffolding subunit of the ATAC complex, which is a complex with acetyltransferase activity on histones H3 and H4. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, May 2017]
    Expression
    Ubiquitous expression in ovary (RPKM 7.4), brain (RPKM 7.1) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See YEATS2 in Genome Data Viewer
    Location:
    3q27.1
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (183697797..183812624)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (186507277..186622124)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (183415585..183530412)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374248 Neighboring gene uncharacterized LOC107986162 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20896 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14943 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14944 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14945 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14946 Neighboring gene kelch like family member 24 Neighboring gene NANOG hESC enhancer GRCh37_chr3:183384502-183385010 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14947 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:183527422-183528621 Neighboring gene YEATS2 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:183535409-183536020 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14948 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14949 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14950 Neighboring gene MAP6 domain containing 1 Neighboring gene presenilin associated rhomboid like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14951

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ10201, FLJ12841, FLJ13308, FLJ33401, FLJ34335, KIAA1197

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables TBP-class protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables histone binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables histone reader activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables modification-dependent protein binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables transcription corepressor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in negative regulation of transcription by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of cell cycle IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of cell cycle ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of cell division IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of cell division ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of embryonic development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of embryonic development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in regulation of transcription by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of transcription by RNA polymerase II ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of tubulin deacetylation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of tubulin deacetylation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    part_of ATAC complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of ATAC complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of ATAC complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of NuA4 histone acetyltransferase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in mitotic spindle NAS
    Non-traceable Author Statement
    more info
    PubMed 
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    YEATS domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_054747.1 RefSeqGene

      Range
      5001..119828
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001351369.2NP_001338298.1  YEATS domain-containing protein 2 isoform 3

      Status: REVIEWED

      Source sequence(s)
      AC068769, AC131160
      Consensus CDS
      CCDS43175.1
      UniProtKB/Swiss-Prot
      A7E2B9, D3DNS9, Q641P6, Q9NW96, Q9ULM3
      Conserved Domains (1) summary
      pfam03366
      Location:231310
      YEATS; YEATS family
    2. NM_001351370.2NP_001338299.1  YEATS domain-containing protein 2 isoform 1

      Status: REVIEWED

      Source sequence(s)
      AC068769, AC131160
      Conserved Domains (1) summary
      pfam03366
      Location:231310
      YEATS; YEATS family
    3. NM_001351371.2NP_001338300.1  YEATS domain-containing protein 2 isoform 2

      Status: REVIEWED

      Source sequence(s)
      AC068769
      Conserved Domains (1) summary
      pfam03366
      Location:231310
      YEATS; YEATS family
    4. NM_018023.5NP_060493.3  YEATS domain-containing protein 2 isoform 3

      See identical proteins and their annotated locations for NP_060493.3

      Status: REVIEWED

      Source sequence(s)
      AC068769, BC082270, BC150273, CA416892
      Consensus CDS
      CCDS43175.1
      UniProtKB/Swiss-Prot
      A7E2B9, D3DNS9, Q641P6, Q9NW96, Q9ULM3
      Related
      ENSP00000306983.5, ENST00000305135.10
      Conserved Domains (1) summary
      pfam03366
      Location:231310
      YEATS; YEATS family

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      183697797..183812624
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047448527.1XP_047304483.1  YEATS domain-containing protein 2 isoform X1

    2. XM_047448528.1XP_047304484.1  YEATS domain-containing protein 2 isoform X2

      UniProtKB/Swiss-Prot
      A7E2B9, D3DNS9, Q641P6, Q9NW96, Q9ULM3
    3. XM_011512965.2XP_011511267.1  YEATS domain-containing protein 2 isoform X4

      Conserved Domains (1) summary
      cl19881
      Location:217256
      YEATS; YEATS family
    4. XM_047448531.1XP_047304487.1  YEATS domain-containing protein 2 isoform X5

    5. XM_047448534.1XP_047304490.1  YEATS domain-containing protein 2 isoform X6

    6. XM_047448535.1XP_047304491.1  YEATS domain-containing protein 2 isoform X7

    7. XM_011512966.2XP_011511268.1  YEATS domain-containing protein 2 isoform X8

      Conserved Domains (1) summary
      pfam03366
      Location:231310
      YEATS; YEATS family
    8. XM_047448542.1XP_047304498.1  YEATS domain-containing protein 2 isoform X11

    9. XM_005247598.6XP_005247655.1  YEATS domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_005247655.1

      Conserved Domains (1) summary
      pfam03366
      Location:231310
      YEATS; YEATS family
    10. XM_017006810.2XP_016862299.1  YEATS domain-containing protein 2 isoform X2

      UniProtKB/Swiss-Prot
      A7E2B9, D3DNS9, Q641P6, Q9NW96, Q9ULM3
      Conserved Domains (1) summary
      pfam03366
      Location:231310
      YEATS; YEATS family
    11. XM_047448530.1XP_047304486.1  YEATS domain-containing protein 2 isoform X4

    12. XM_047448532.1XP_047304488.1  YEATS domain-containing protein 2 isoform X5

    13. XM_047448536.1XP_047304492.1  YEATS domain-containing protein 2 isoform X8

    14. XM_047448538.1XP_047304494.1  YEATS domain-containing protein 2 isoform X9

    15. XM_047448533.1XP_047304489.1  YEATS domain-containing protein 2 isoform X5

    16. XM_047448537.1XP_047304493.1  YEATS domain-containing protein 2 isoform X8

    17. XM_047448540.1XP_047304496.1  YEATS domain-containing protein 2 isoform X9

    18. XM_017006811.3XP_016862300.1  YEATS domain-containing protein 2 isoform X3

      Conserved Domains (1) summary
      pfam03366
      Location:178257
      YEATS; YEATS family
    19. XM_047448541.1XP_047304497.1  YEATS domain-containing protein 2 isoform X10

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      186507277..186622124
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054347198.1XP_054203173.1  YEATS domain-containing protein 2 isoform X1

    2. XM_054347200.1XP_054203175.1  YEATS domain-containing protein 2 isoform X2

    3. XM_054347202.1XP_054203177.1  YEATS domain-containing protein 2 isoform X4

    4. XM_054347204.1XP_054203179.1  YEATS domain-containing protein 2 isoform X5

    5. XM_054347207.1XP_054203182.1  YEATS domain-containing protein 2 isoform X6

    6. XM_054347208.1XP_054203183.1  YEATS domain-containing protein 2 isoform X7

    7. XM_054347209.1XP_054203184.1  YEATS domain-containing protein 2 isoform X8

    8. XM_054347215.1XP_054203190.1  YEATS domain-containing protein 2 isoform X11

    9. XM_054347197.1XP_054203172.1  YEATS domain-containing protein 2 isoform X1

    10. XM_054347199.1XP_054203174.1  YEATS domain-containing protein 2 isoform X2

    11. XM_054347212.1XP_054203187.1  YEATS domain-containing protein 2 isoform X9

    12. XM_054347210.1XP_054203185.1  YEATS domain-containing protein 2 isoform X8

    13. XM_054347203.1XP_054203178.1  YEATS domain-containing protein 2 isoform X4

    14. XM_054347205.1XP_054203180.1  YEATS domain-containing protein 2 isoform X5

    15. XM_054347206.1XP_054203181.1  YEATS domain-containing protein 2 isoform X5

    16. XM_054347211.1XP_054203186.1  YEATS domain-containing protein 2 isoform X8

    17. XM_054347213.1XP_054203188.1  YEATS domain-containing protein 2 isoform X9

    18. XM_054347201.1XP_054203176.1  YEATS domain-containing protein 2 isoform X3

    19. XM_054347214.1XP_054203189.1  YEATS domain-containing protein 2 isoform X10