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    EMC1 ER membrane protein complex subunit 1 [ Homo sapiens (human) ]

    Gene ID: 23065, updated on 5-May-2024

    Summary

    Official Symbol
    EMC1provided by HGNC
    Official Full Name
    ER membrane protein complex subunit 1provided by HGNC
    Primary source
    HGNC:HGNC:28957
    See related
    Ensembl:ENSG00000127463 MIM:616846; AllianceGenome:HGNC:28957
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CAVIPMR; KIAA0090
    Summary
    This gene encodes a single-pass type I transmembrane protein, which is a subunit of the endoplasmic reticulum membrane protein complex (EMC). Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2012]
    Expression
    Ubiquitous expression in placenta (RPKM 10.5), brain (RPKM 9.0) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See EMC1 in Genome Data Viewer
    Location:
    1p36.13
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (19215660..19251524, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (19039172..19075048, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (19542154..19578018, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376815 Neighboring gene MPRA-validated peak97 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:19334779-19335422 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:19337151-19338350 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:19338425-19339336 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:19354797-19355297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:19362307-19362878 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:19370112-19371086 Neighboring gene Sharpr-MPRA regulatory region 2200 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:19396435-19397360 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:19403898-19404066 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:19407589-19408788 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 295 Neighboring gene ubiquitin protein ligase E3 component n-recognin 4 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:19446050-19447249 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:19448647-19449846 Neighboring gene NANOG hESC enhancer GRCh37_chr1:19453252-19454051 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:19465867-19466616 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:19482517-19483716 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:19487245-19488444 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:19528831-19529332 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 350 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 296 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 297 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 351 Neighboring gene EMC1 antisense RNA 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:19562203-19562373 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:19577931-19578436 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:19580253-19580754 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:19580755-19581254 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:19595541-19596389 Neighboring gene MRT4 homolog, ribosome maturation factor Neighboring gene aldo-keto reductase family 7 like (gene/pseudogene)

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    HIV-1 interactions

    Protein interactions

    Protein Gene Interaction Pubs
    Envelope transmembrane glycoprotein gp41 env HIV-1 gp41 is identified to have a physical interaction with KIAA0090 in human HEK293 and/or Jurkat cell lines by using affinity tagging and purification mass spectrometry analyses PubMed

    Go to the HIV-1, Human Interaction Database

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • KIAA0090

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    contributes_to membrane insertase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of EMC complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of EMC complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of EMC complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    part_of EMC complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endoplasmic reticulum membrane NAS
    Non-traceable Author Statement
    more info
    PubMed 
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of protein-containing complex IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    ER membrane protein complex subunit 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_032948.1 RefSeqGene

      Range
      5036..40900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001271427.2NP_001258356.1  ER membrane protein complex subunit 1 isoform 2 precursor

      See identical proteins and their annotated locations for NP_001258356.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. The resulting isoform (2) lacks an internal aa, compared to isoform 1.
      Source sequence(s)
      AL357564, BX648708, D42044, DB097686
      Consensus CDS
      CCDS59191.1
      UniProtKB/TrEMBL
      A0A8I5KW55
      Related
      ENSP00000364345.3, ENST00000375199.7
      Conserved Domains (2) summary
      pfam07774
      Location:786991
      DUF1620; Protein of unknown function (DUF1620)
      pfam13360
      Location:59218
      PQQ_2; PQQ-like domain
    2. NM_001271428.2NP_001258357.1  ER membrane protein complex subunit 1 isoform 3 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) uses an alternate in-frame splice site in the central region, compared to variant 1. The resulting isoform (2) lacks an internal aa, compared to isoform 1.
      Source sequence(s)
      AL357564, BC034589, BX648708, DB097686
      UniProtKB/TrEMBL
      A0A8I5KW55
      Related
      ENSP00000510231.1, ENST00000688219.1
      Conserved Domains (2) summary
      pfam07774
      Location:786991
      DUF1620; Protein of unknown function (DUF1620)
      pfam13360
      Location:59218
      PQQ_2; PQQ-like domain
    3. NM_001271429.2NP_001258358.1  ER membrane protein complex subunit 1 isoform 4 precursor

      See identical proteins and their annotated locations for NP_001258358.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) lacks an in-frame exon in the 5' coding region, compared to variant 1. The resulting isoform (4) lacks an internal segment, compared to isoform 1.
      Source sequence(s)
      AK075563, AL357564, BC034589, BX648708, DB097686
      Consensus CDS
      CCDS59190.1
      UniProtKB/TrEMBL
      A0A8I5KW55
      Related
      ENSP00000364354.3, ENST00000375208.7
      Conserved Domains (1) summary
      pfam07774
      Location:765970
      DUF1620; Protein of unknown function (DUF1620)
    4. NM_001375820.1NP_001362749.1  ER membrane protein complex subunit 1 isoform 5 precursor

      Status: REVIEWED

      Source sequence(s)
      AL035413, AL357564
      Consensus CDS
      CCDS90871.1
      UniProtKB/TrEMBL
      A0A8I5KW55, H7C5A2
      Related
      ENSP00000419345.2, ENST00000486405.2
      Conserved Domains (2) summary
      pfam07774
      Location:790995
      DUF1620; Protein of unknown function (DUF1620)
      pfam13360
      Location:60218
      PQQ_2; PQQ-like domain
    5. NM_001375821.1NP_001362750.1  ER membrane protein complex subunit 1 isoform 6 precursor

      Status: REVIEWED

      Source sequence(s)
      AL035413, AL357564
      UniProtKB/TrEMBL
      A0A8I5KW55
      Conserved Domains (2) summary
      pfam07774
      Location:789994
      DUF1620; Protein of unknown function (DUF1620)
      pfam13360
      Location:60218
      PQQ_2; PQQ-like domain
    6. NM_015047.3NP_055862.1  ER membrane protein complex subunit 1 isoform 1 precursor

      See identical proteins and their annotated locations for NP_055862.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AL357564, BC034589, BX648708
      Consensus CDS
      CCDS190.1
      UniProtKB/Swiss-Prot
      A8K6F3, Q14700, Q5TG62, Q63HL0, Q63HL3, Q8N766, Q8NBH8
      UniProtKB/TrEMBL
      A0A8I5KW55
      Related
      ENSP00000420608.1, ENST00000477853.6
      Conserved Domains (2) summary
      pfam07774
      Location:787992
      DUF1620; Protein of unknown function (DUF1620)
      pfam13360
      Location:59218
      PQQ_2; PQQ-like domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      19215660..19251524 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      19039172..19075048 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)