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    LOC105376975 uncharacterized LOC105376975 [ Homo sapiens (human) ]

    Gene ID: 105376975, updated on 22-Oct-2024

    Summary

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    Gene symbol
    LOC105376975
    Gene description
    uncharacterized LOC105376975
    See related
    Ensembl:ENSG00000286352
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 3.7) See more
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    Genomic context

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    See LOC105376975 in Genome Data Viewer
    Location:
    3p24.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (17742944..17745662)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (17744978..17747705)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (17784436..17787154)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 5 Neighboring gene MPRA-validated peak4556 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:17734513-17735014 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:17735015-17735514 Neighboring gene RNA, U7 small nuclear 10 pseudogene Neighboring gene tRNA-Cys (anticodon GCA) 25-1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14125 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:17783809-17784512 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19573 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14127 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14128 Neighboring gene uncharacterized LOC124909350 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancers GRCh37_chr3:17901798-17902528 and GRCh37_chr3:17902529-17903258 Neighboring gene pyrophosphatase (inorganic) 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135536.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX119265, HY222860
      Related
      ENST00000832483.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      17742944..17745662
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      17744978..17747705
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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