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    leprot leptin receptor overlapping transcript [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 100528542, updated on 20-Aug-2024

    Summary

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    Gene symbol
    leprot
    Gene description
    leptin receptor overlapping transcript
    See related
    EnsemblRapid:ENSIPUG00020030422
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Also known as
    obrg
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    Genomic context

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    See leprot in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Coco_2.0 (GCF_001660625.3) 7 NC_030422.2 (11917086..11921738, complement)
    101 previous assembly IpCoco_1.2 (GCF_001660625.2) 7 NC_030422.1 (10140495..10145135, complement)

    Chromosome 7 - NC_030422.2Genomic Context describing neighboring genes Neighboring gene GT1 domain-containing protein Neighboring gene phosphodiesterase 4B, cAMP-specific b Neighboring gene tyrosine-protein kinase JAK1 Neighboring gene uncharacterized LOC108267488 Neighboring gene phosphoglucomutase-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
    2. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in late endosome to vacuole transport via multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of growth hormone receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leptin receptor gene-related protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001200812.2 → NP_001187741.1  leptin receptor gene-related protein

      See identical proteins and their annotated locations for NP_001187741.1

      Status: PROVISIONAL

      Source sequence(s)
      GU589109
      UniProtKB/TrEMBL
      E3TFH5
      Related
      ENSIPUP00020056835.1, ENSIPUT00020073559.1
      Conserved Domains (1) summary
      pfam04133
      Location:7 → 124
      Vps55; Vacuolar protein sorting 55

    RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coco_2.0 Primary Assembly

    Genomic

    1. NC_030422.2 Reference Coco_2.0 Primary Assembly

      Range
      11917086..11921738 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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