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    med18 mediator of RNA polymerase II transcription, subunit 18 homolog (yeast) [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 100528830, updated on 24-Aug-2024

    Summary

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    Gene symbol
    med18
    Gene description
    mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Orthologs
    human zebrafish all
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    Genomic context

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    See med18 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Coco_2.0 (GCF_001660625.3) 1 NC_030416.2 (20513387..20522952, complement)
    101 previous assembly IpCoco_1.2 (GCF_001660625.2) 1 NC_030416.1 (19610951..19618004, complement)

    Chromosome 1 - NC_030416.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108261123 Neighboring gene forkhead box O6 a Neighboring gene uncharacterized LOC108257214 Neighboring gene cytochrome P450 4A4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
    2. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in termination of RNA polymerase II transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of core mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit 18
    Names
    mediator complex subunit 18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001201100.2 → NP_001188029.1  mediator of RNA polymerase II transcription subunit 18

      See identical proteins and their annotated locations for NP_001188029.1

      Status: PROVISIONAL

      Source sequence(s)
      GU589504
      UniProtKB/TrEMBL
      E3TGL8
      Conserved Domains (1) summary
      pfam09637
      Location:19 → 207
      Med18; Med18 protein

    RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coco_2.0 Primary Assembly

    Genomic

    1. NC_030416.2 Reference Coco_2.0 Primary Assembly

      Range
      20513387..20522952 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017466830.3 → XP_017322319.1  mediator of RNA polymerase II transcription subunit 18 isoform X1

      UniProtKB/TrEMBL
      A0A2D0QVD9
      Conserved Domains (1) summary
      pfam09637
      Location:19 → 207
      Med18; Med18 protein

    2. XM_017466898.3 → XP_017322387.1  mediator of RNA polymerase II transcription subunit 18 isoform X1

      UniProtKB/TrEMBL
      A0A2D0QVD9
      Conserved Domains (1) summary
      pfam09637
      Location:19 → 207
      Med18; Med18 protein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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