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    Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824358, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
    Primary source
    TAIR:AT3G51950
    Locus tag
    AT3G51950
    See related
    Araport:AT3G51950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (19277594..19281393, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene oxidoreductase/transition metal ion-binding protein Neighboring gene basic leucine zipper 24 Neighboring gene ncRNA Neighboring gene acyl-CoA sterol acyl transferase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    2. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035763.2
    NM_001339541.1
    NM_001339542.1
    NM_115054.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
    NP_001030840.1
    • Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G63450.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_190763.1
    • Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G63450.3); Has 248 Blast hits to 214 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 5; Plants - 227; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19277594..19281393 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115054.4 → NP_190763.1  Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190763.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LPV9, Q8L9E0, Q8RXK0, Q9SV09
      UniProtKB/TrEMBL
      A0A5S9XK38, A0A654FIE7
      Conserved Domains (3) summary
      smart00356
      Location:149 → 174
      ZnF_C3H1; zinc finger
      COG0724
      Location:270 → 437
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12458
      Location:260 → 329
      RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

    2. NM_001339541.1 → NP_001326633.1  Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LPV9, Q8L9E0, Q8RXK0, Q9SV09
      UniProtKB/TrEMBL
      A0A5S9XK38, A0A654FIE7
      Conserved Domains (3) summary
      smart00356
      Location:149 → 174
      ZnF_C3H1; zinc finger
      COG0724
      Location:270 → 437
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12458
      Location:260 → 329
      RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

    3. NM_001035763.2 → NP_001030840.1  Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030840.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LPV9, Q8L9E0, Q8RXK0, Q9SV09
      UniProtKB/TrEMBL
      A0A5S9XK38, A0A654FIE7
      Conserved Domains (3) summary
      smart00356
      Location:149 → 174
      ZnF_C3H1; zinc finger
      COG0724
      Location:270 → 437
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12458
      Location:260 → 329
      RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

    4. NM_001339542.1 → NP_001326632.1  Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LPV9, Q8L9E0, Q8RXK0, Q9SV09
      UniProtKB/TrEMBL
      A0A5S9XK38, A0A654FIE7
      Conserved Domains (3) summary
      smart00356
      Location:149 → 174
      ZnF_C3H1; zinc finger
      COG0724
      Location:270 → 437
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12458
      Location:260 → 329
      RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SV09.1

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