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    LOC109472174 fermitin family homolog 2-like [ Branchiostoma belcheri (Belcher's lancelet) ]

    Gene ID: 109472174, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC109472174
    Gene description
    fermitin family homolog 2-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Branchiostoma belcheri
    Lineage
    Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
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    Genomic context

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    See LOC109472174 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current Haploidv18h27 (GCF_001625305.1) Unplaced Scaffold NW_017803876.1 (2339865..2380396, complement)

    NW_017803876.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase pim-1 pseudogene Neighboring gene ral GTPase-activating protein subunit beta-like Neighboring gene tetratricopeptide repeat protein 8-like Neighboring gene Golgi-associated plant pathogenesis-related protein 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_017803876.1 Unplaced Scaffold Reference Haploidv18h27 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables integrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in integrin-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-substrate junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fermitin family homolog 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Branchiostoma belcheri Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Haploidv18h27 Primary Assembly

    Genomic

    1. NW_017803876.1 Reference Haploidv18h27 Primary Assembly

      Range
      2339865..2380396 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019771762.1 → XP_019627321.1  fermitin family homolog 2-like isoform X2

      UniProtKB/TrEMBL
      A0A6P4YDR3

    2. XM_019771764.1 → XP_019627323.1  fermitin family homolog 2-like isoform X4

      UniProtKB/TrEMBL
      A0A6P4YSI2

    3. XM_019771761.1 → XP_019627320.1  fermitin family homolog 2-like isoform X1

      UniProtKB/TrEMBL
      A0A6P4YDR3

    4. XM_019771766.1 → XP_019627325.1  fermitin family homolog 2-like isoform X6

      UniProtKB/TrEMBL
      A0A6P4YDR7

    5. XM_019771765.1 → XP_019627324.1  fermitin family homolog 2-like isoform X5

      UniProtKB/TrEMBL
      A0A6P4YDR7

    6. XM_019771767.1 → XP_019627326.1  fermitin family homolog 2-like isoform X7

      UniProtKB/TrEMBL
      A0A6P4ZCB6

    7. XM_019771763.1 → XP_019627322.1  fermitin family homolog 2-like isoform X3

      UniProtKB/TrEMBL
      A0A6P4YDR3
    Nucleotide Protein
    Heading Accession and Version

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