U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    RNA45SN5 RNA, 45S pre-ribosomal N5 [ Homo sapiens (human) ]

    Gene ID: 100861532, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RNA45SN5provided by HGNC
    Official Full Name
    RNA, 45S pre-ribosomal N5provided by HGNC
    Primary source
    HGNC:HGNC:53530
    See related
    AllianceGenome:HGNC:53530
    Gene type
    rRNA
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RNA45S5
    Summary
    45S ribosomal DNA (rDNA) arrays, or clusters, are present on human chromosomes 13, 14, 15, 21 and 22, designated RNR1 through RNR5, respectively. Each cluster consists of multiple 45S rDNA repeat units that vary in number among individuals and chromosomes, with total diploid copy number estimates ranging from 60 to >800 repeat units in a human genome. The 45S rDNA repeat unit encodes a 45S rRNA precursor, transcribed by RNA polymerase I, which is processed to form the 18S, 5.8S and 28S rRNAs. This gene is a representative copy of the 45S pre-ribosomal RNA whose chromosomal location is unknown. [provided by RefSeq, Mar 2017]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RNA45SN5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Unplaced Scaffold NT_167214.1 (105424..118780)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) Unplaced Scaffold NT_167214.1 (105424..118780)

    NT_167214.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100507395 Neighboring gene vomeronasal 1 receptor 112 pseudogene Neighboring gene uncharacterized LOC100507412 Neighboring gene RNA, 18S ribosomal N5 Neighboring gene RNA, 5.8S ribosomal N5 Neighboring gene RNA, 28S ribosomal N5 Neighboring gene cell division cycle 27 homolog pseudogene Neighboring gene origin of replication in ribosomal DNA intergenic spacer Neighboring gene RNA, 18S ribosomal pseudogene 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

    Go to the top of the page Help

    Other Names

    • 45S pre-RNA
    • 45S pre-ribosomal RNA
    • RNA, 45S pre-ribosomal 5

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in miRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046235.3 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL592188

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NT_167214.1 Reference GRCh38.p14 Primary Assembly

      Range
      105424..118780
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials