U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    rag1 recombination activating 1 [ Xiphophorus hellerii (green swordtail) ]

    Gene ID: 116729925, updated on 18-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    rag1
    Gene description
    recombination activating 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus hellerii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See rag1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 2 NC_045673.1 (15040519..15047417)

    Chromosome 2 - NC_045673.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116736784 Neighboring gene 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) Neighboring gene recombination activating gene 2 Neighboring gene neurexophilin-1-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_045673.1 Chromosome 2 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in V(D)J recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in adaptive immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pre-B cell allelic exclusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA recombinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of endodeoxyribonuclease complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    V(D)J recombination-activating protein 1
    Names
    recombination activating protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Genomic

    1. NC_045673.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

      Range
      15040519..15047417
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032578814.1 → XP_032434705.1  V(D)J recombination-activating protein 1

      Conserved Domains (3) summary
      pfam12940
      Location:413 → 1060
      RAG1; Recombination-activation protein 1 (RAG1), recombinase
      cd16530
      Location:309 → 351
      RING-HC_RAG1; RING finger, HC subclass, found in recombination activating gene-1 (RAG-1) and similar proteins
      pfam12560
      Location:13 → 309
      RAG1_imp_bd; RAG1 importin binding
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.