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    LOC8085832 geranylgeranyl diphosphate reductase, chloroplastic [ Sorghum bicolor (sorghum) ]

    Gene ID: 8085832, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8085832
    Gene description
    geranylgeranyl diphosphate reductase, chloroplastic
    Locus tag
    SORBI_3003G122100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8085832 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 3 NC_012872.2 (11124650..11126348)

    Chromosome 3 - NC_012872.2Genomic Context describing neighboring genes Neighboring gene random slug protein 5 Neighboring gene pre-mRNA-splicing factor SPF27 homolog Neighboring gene ADP-ribosylation factor 2 Neighboring gene probable envelope ADP,ATP carrier protein, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012872.2 Chromosome 3 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables geranylgeranyl reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chlorophyll biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    geranylgeranyl diphosphate reductase, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012872.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      11124650..11126348
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002455367.2 → XP_002455412.1  geranylgeranyl diphosphate reductase, chloroplastic

      See identical proteins and their annotated locations for XP_002455412.1

      UniProtKB/TrEMBL
      A0A921RCF0, C5XGI2
      Conserved Domains (1) summary
      PLN00093
      Location:1 → 440
      PLN00093; geranylgeranyl diphosphate reductase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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