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    LOC8070869 methyltransferase-like protein 5 [ Sorghum bicolor (sorghum) ]

    Gene ID: 8070869, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8070869
    Gene description
    methyltransferase-like protein 5
    Locus tag
    SORBI_3010G050400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8070869 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 10 NC_012879.2 (3887823..3892102, complement)

    Chromosome 10 - NC_012879.2Genomic Context describing neighboring genes Neighboring gene carotenoid 9,10(9',10')-cleavage dioxygenase 1 Neighboring gene uncharacterized LOC110430982 Neighboring gene MADS-box transcription factor 5 Neighboring gene uncharacterized LOC110430870

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012879.2 Chromosome 10 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables rRNA (adenine-N6-)-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    methyltransferase-like protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012879.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      3887823..3892102 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002437837.2 → XP_002437882.1  methyltransferase-like protein 5 isoform X2

      See identical proteins and their annotated locations for XP_002437882.1

      UniProtKB/TrEMBL
      A0A921Q196, C5Z4T8
      Conserved Domains (1) summary
      COG2263
      Location:4 → 203
      COG2263; Predicted RNA methylase [General function prediction only]

    2. XM_021450587.1 → XP_021306262.1  methyltransferase-like protein 5 isoform X1

      UniProtKB/TrEMBL
      A0A1W0VRH8
      Conserved Domains (1) summary
      COG2263
      Location:4 → 221
      COG2263; Predicted RNA methylase [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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