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    LINC02532 long intergenic non-protein coding RNA 2532 [ Homo sapiens (human) ]

    Gene ID: 100422737, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC02532provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2532provided by HGNC
    Primary source
    HGNC:HGNC:53549
    See related
    Ensembl:ENSG00000235142 AllianceGenome:HGNC:53549
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in kidney (RPKM 13.1), gall bladder (RPKM 9.8) and 2 other tissues See more
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    Genomic context

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    Location:
    6q21
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (106717452..106787541, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (107893570..107963632, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (107165327..107235416, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377927 Neighboring gene long intergenic non-protein coding RNA 2526 Neighboring gene RNA, U6 small nuclear 117, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:107196222-107197147 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24894 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:107222075-107222575 Neighboring gene Sharpr-MPRA regulatory region 10433 Neighboring gene microRNA 587 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:107252150-107252910 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24895 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24896 Neighboring gene uncharacterized LOC124901552 Neighboring gene uncharacterized LOC105377928

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. LINC02532 Contributes to Radiosensitivity in Clear Cell Renal Cell Carcinoma through the miR-654-5p/YY1 Axis. Zhou X, et al. Molecules, 2021 Nov 22. PMID 34834139, Free PMC Article
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LINC02532 Contributes to Radiosensitivity in Clear Cell Renal Cell Carcinoma through the miR-654-5p/YY1 Axis.
      Title: LINC02532 Contributes to Radiosensitivity in Clear Cell Renal Cell Carcinoma through the miR-654-5p/YY1 Axis.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • FLJ22314, FLJ41422, FLJ42409

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033557.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK025967, DA628975
      Related
      ENST00000436659.6

    2. NR_147986.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL080314, BX116847, DA628975
      Related
      ENST00000670549.2

    3. NR_147987.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL080314, DA627235
      Related
      ENST00000433965.8

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      106717452..106787541 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      107893570..107963632 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_015365.1: Suppressed sequence

      Description
      NR_015365.1: This RefSeq was permanently suppressed because currently there is not sufficient data to support this transcript.
    Nucleotide Protein
    Heading Accession and Version

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