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    MIR548A1HG MIR548A1 host gene [ Homo sapiens (human) ]

    Gene ID: 105374956, updated on 10-Oct-2023

    Summary

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    Official Symbol
    MIR548A1HGprovided by HGNC
    Official Full Name
    MIR548A1 host geneprovided by HGNC
    Primary source
    HGNC:HGNC:53539
    See related
    AllianceGenome:HGNC:53539
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    6p22.3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (18522747..18722898)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (18394447..18594705)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (18522978..18723129)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ring finger protein 144B Neighboring gene uncharacterized LOC124901271 Neighboring gene uncharacterized LOC105374955 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:18527823-18528458 Neighboring gene VISTA enhancer hs1052 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:18584790-18585989 Neighboring gene microRNA 548a-1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:18656829-18657328 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:18693220-18694419 Neighboring gene uncharacterized LOC105374957 Neighboring gene Sharpr-MPRA regulatory region 7591 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:18759725-18760225 Neighboring gene tRNA-Gln (anticodon CTG) 1-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_149116.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK098665, AL136230

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      18522747..18722898
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      18394447..18594705
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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