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    FAM153CP family with sequence similarity 153 member C, pseudogene [ Homo sapiens (human) ]

    Gene ID: 653316, updated on 17-Sep-2024

    Summary

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    Official Symbol
    FAM153CPprovided by HGNC
    Official Full Name
    family with sequence similarity 153 member C, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:33936
    See related
    Ensembl:ENSG00000204677 AllianceGenome:HGNC:33936
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FAM153C; NY-REN-7-like
    Expression
    Biased expression in testis (RPKM 25.3), spleen (RPKM 6.3) and 6 other tissues See more
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    Genomic context

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    See FAM153CP in Genome Data Viewer
    Location:
    5q35.3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (178007692..178063588)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (178559018..178615001)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (177434693..177490589)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:177423395-177423894 Neighboring gene PROP paired-like homeobox 1 Neighboring gene ankyrin repeat domain 18A pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr5:177436962-177437506 Neighboring gene DLCR-2B recombination region Neighboring gene ribosomal protein L19 pseudogene 9 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16707 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16708 Neighboring gene uncharacterized LOC124901147 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23733 Neighboring gene CRISPRi-validated cis-regulatory element chr5.4886 Neighboring gene uncharacterized LOC105377754

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. CFTR interactome mapping using the mammalian membrane two-hybrid high-throughput screening system. Lim SH, et al. Mol Syst Biol, 2022 Feb. PMID 35156780, Free PMC Article
    2. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    5. Architecture of the human interactome defines protein communities and disease networks. Huttlin EL, et al. Nature, 2017 May 25. PMID 28514442, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • family with sequence similarity 153, member C
    • protein FAM153C

    Clone Names

    • FLJ60013

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_149722.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC136632, AC136940
      Related
      ENST00000651508.2

    2. NR_159407.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC101341, BC131737

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      178007692..178063588
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      178559018..178615001
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001079527.1: Suppressed sequence

      Description
      NM_001079527.1: This RefSeq was permanently suppressed because there is insufficient support for the transcript.

    2. NM_001355471.1: Suppressed sequence

      Description
      NM_001355471.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

    3. NR_038353.1: Suppressed sequence

      Description
      NR_038353.1: This RefSeq was removed because it is thought to be partial.
    Nucleotide Protein
    Heading Accession and Version

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