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    FAM182B family with sequence similarity 182 member B [ Homo sapiens (human) ]

    Gene ID: 728882, updated on 10-Oct-2023

    Summary

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    Official Symbol
    FAM182Bprovided by HGNC
    Official Full Name
    family with sequence similarity 182 member Bprovided by HGNC
    Primary source
    HGNC:HGNC:34503
    See related
    AllianceGenome:HGNC:34503
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in brain (RPKM 1.3), skin (RPKM 0.8) and 12 other tissues See more
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    Genomic context

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    See FAM182B in Genome Data Viewer
    Location:
    20p11.1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (25763452..25801291, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (25828965..25874788, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (25744088..25781927, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985400 Neighboring gene vomeronasal 1 receptor 108 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17675 Neighboring gene uncharacterized LOC105372582 Neighboring gene BSND pseudogene 1 Neighboring gene uncharacterized LOC101926935 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:25826979-25827489 Neighboring gene OCT4 hESC enhancer GRCh37_chr20:25827695-25828196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:25828612-25829112 Neighboring gene NANOG hESC enhancer GRCh37_chr20:25830574-25831098 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17676 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17677 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17678 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17679 Neighboring gene BSND pseudogene 2 Neighboring gene CFTR pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. The DNA sequence and comparative analysis of human chromosome 20. Deloukas P, et al. Nature, 2001 Dec 20-27. PMID 11780052
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • MGC51338, DKFZp434B104

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026714.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL390198

    2. NR_027061.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL390198

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      25763452..25801291 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      25828965..25874788 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5T319.1 GenPept UniProtKB/Swiss-Prot:Q5T319

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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