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    CCDC88A coiled-coil domain containing 88A [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

    Gene ID: 112404854, updated on 15-Mar-2024

    Summary

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    Gene symbol
    CCDC88A
    Gene description
    coiled-coil domain containing 88A
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
    Orthologs
    human mouse all
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    Genomic context

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    See CCDC88A in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020173955.1 (8431840..8558910)

    NW_020173955.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 4 regulatory subunit 3B Neighboring gene cilia and flagella associated protein 36 Neighboring gene prolyl-tRNA synthetase associated domain-containing protein 1 Neighboring gene mitochondrial translational initiation factor 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020173955 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dynein light intermediate chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic microtubule organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton-dependent intracellular transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    girdin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Genomic

    1. NW_020173955.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

      Range
      8431840..8558910
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024752978.1 → XP_024608746.1  girdin isoform X7

      UniProtKB/TrEMBL
      A0A341C1P6
      Conserved Domains (1) summary
      cl25732
      Location:474 → 1330
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_024752980.1 → XP_024608748.1  girdin isoform X9

      UniProtKB/TrEMBL
      A0A341C331
      Conserved Domains (1) summary
      cl25732
      Location:474 → 1307
      SMC_N; RecF/RecN/SMC N terminal domain

    3. XM_024752979.1 → XP_024608747.1  girdin isoform X8

      UniProtKB/TrEMBL
      A0A341C4B7
      Conserved Domains (1) summary
      cl25732
      Location:474 → 1307
      SMC_N; RecF/RecN/SMC N terminal domain

    4. XM_024752970.1 → XP_024608738.1  girdin isoform X1

      UniProtKB/TrEMBL
      A0A341C322
      Conserved Domains (1) summary
      cl25732
      Location:474 → 1330
      SMC_N; RecF/RecN/SMC N terminal domain

    5. XM_024752971.1 → XP_024608739.1  girdin isoform X2

      UniProtKB/TrEMBL
      A0A341C2L2
      Conserved Domains (1) summary
      cl25732
      Location:474 → 1330
      SMC_N; RecF/RecN/SMC N terminal domain

    6. XM_024752975.1 → XP_024608743.1  girdin isoform X4

      UniProtKB/TrEMBL
      A0A341C326
      Conserved Domains (1) summary
      cl25732
      Location:474 → 1330
      SMC_N; RecF/RecN/SMC N terminal domain

    7. XM_024752976.1 → XP_024608744.1  girdin isoform X5

      UniProtKB/TrEMBL
      A0A341C2M2
      Conserved Domains (1) summary
      cl25732
      Location:474 → 1330
      SMC_N; RecF/RecN/SMC N terminal domain

    8. XM_024752972.1 → XP_024608740.1  girdin isoform X3

      UniProtKB/TrEMBL
      A0A341C1L4
      Conserved Domains (1) summary
      cl25732
      Location:474 → 1330
      SMC_N; RecF/RecN/SMC N terminal domain

    9. XM_024752977.1 → XP_024608745.1  girdin isoform X6

      UniProtKB/TrEMBL
      A0A341C1L8
      Conserved Domains (1) summary
      cl25732
      Location:474 → 1330
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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