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    GCM1 glial cells missing transcription factor 1 [ Vulpes vulpes (red fox) ]

    Gene ID: 112914239, updated on 15-Mar-2024

    Summary

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    Gene symbol
    GCM1
    Gene description
    glial cells missing transcription factor 1
    See related
    Ensembl:ENSVVUG00000000853
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vulpes vulpes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
    Orthologs
    human mouse all
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    Genomic context

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    See GCM1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356442.1 (18361607..18378372, complement)

    NW_020356442.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene ELOVL fatty acid elongase 5 Neighboring gene 40S ribosomal protein S10 pseudogene Neighboring gene 40S ribosomal protein S27

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020356442 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation involved in embryonic placenta development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in gliogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chorion-specific transcription factor GCMa
    Names
    glial cells missing homolog 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference VulVul2.2 Primary Assembly

    Genomic

    1. NW_020356442.1 Reference VulVul2.2 Primary Assembly

      Range
      18361607..18378372 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025991226.1 → XP_025847011.1  chorion-specific transcription factor GCMa

      UniProtKB/TrEMBL
      A0A3Q7RXY7
      Related
      ENSVVUP00000000982.1, ENSVVUT00000001488.1
      Conserved Domains (1) summary
      pfam03615
      Location:30 → 167
      GCM; GCM motif protein
    Nucleotide Protein Strain
    Heading Accession and Version

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