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    Gm3696 predicted gene 3696 [ Mus musculus (house mouse) ]

    Gene ID: 100042149, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm3696provided by MGI
    Official Full Name
    predicted gene 3696provided by MGI
    Primary source
    MGI:MGI:3781872
    See related
    Ensembl:ENSMUSG00000092167 AllianceGenome:MGI:3781872
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    544988; Gm5794; Gm10014
    Expression
    Biased expression in CNS E18 (RPKM 5.1), CNS E14 (RPKM 3.0) and 10 other tissues See more
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    Genomic context

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    See Gm3696 in Genome Data Viewer
    Location:
    14; 14 A2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (15364270..15386748)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (7074404..7106256, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31035 Neighboring gene predicted gene 3512 Neighboring gene predicted gene 6676 Neighboring gene predicted gene 3685 Neighboring gene predicted gene 10406

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Clone Names

    • MGC68059

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    alpha25-takusan
    Names
    alpha32-takusan
    alpha5-takusan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024712.3 → NP_001019883.2  alpha25-takusan isoform a

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a).
      Source sequence(s)
      AC141567, AC164618
      Consensus CDS
      CCDS49397.1
      UniProtKB/TrEMBL
      A0AA74KSZ2, K7N751
      Related
      ENSMUSP00000132868.2, ENSMUST00000167923.8
      Conserved Domains (1) summary
      pfam04822
      Location:50 → 125
      Takusan; Takusan

    2. NM_001368229.1 → NP_001355158.1  alpha25-takusan isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (b) is shorter at the N-terminus compared to isoform a. Variants 2 and 3 both encode the same isoform (b).
      Source sequence(s)
      AC141567, AC164618
      UniProtKB/TrEMBL
      A6NAS2, A6NAU2

    3. NM_001368230.1 → NP_001355159.1  alpha25-takusan isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (b) is shorter at the N-terminus compared to isoform a. Variants 2 and 3 both encode the same isoform (b).
      Source sequence(s)
      AC141567, AC164618
      UniProtKB/TrEMBL
      A6NAS2, A6NAU2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      15364270..15386748
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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