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    LOC100186310 protein jagunal homolog 1-A [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 100186310, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC100186310
    Gene description
    protein jagunal homolog 1-A
    See related
    Ensembl:ENSCING00000011847
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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    Genomic context

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    See LOC100186310 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) 7 NC_020172.2 (5338585..5340179)

    Chromosome 7 - NC_020172.2Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly protein COX11, mitochondrial-like Neighboring gene transcription initiation factor TFIID subunit 6 Neighboring gene transcription factor 21-like Neighboring gene hydroxysteroid 11-beta-dehydrogenase 1-like protein Neighboring gene prolactin regulatory element-binding protein-like Neighboring gene uncharacterized LOC100176148

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_020172.2 Chromosome 7 Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein jagunal homolog 1-A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NC_020172.2 Reference KH Primary Assembly

      Range
      5338585..5340179
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018812463.2 → XP_018668008.1  protein jagunal homolog 1-A isoform X1

      UniProtKB/TrEMBL
      A0A1W5B6A6

    2. XM_002127593.5 → XP_002127629.1  protein jagunal homolog 1-A isoform X2

      UniProtKB/TrEMBL
      A0A1W2WEB5, F6ZL23
      Related
      ENSCINP00000022448
      Conserved Domains (1) summary
      pfam07086
      Location:1 → 167
      Jagunal; Jagunal, ER re-organization during oogenesis
    Nucleotide Protein
    Heading Accession and Version

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