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    LOC100193026 uncharacterized LOC100193026 [ Zea mays ]

    Gene ID: 100193026, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100193026
    Gene description
    uncharacterized LOC100193026
    Locus tag
    ZEAMMB73_Zm00001d048769
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (5496867..5499879)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (5252488..5255448)

    Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC118476858 Neighboring gene probable stress-associated endoplasmic reticulum protein Neighboring gene Putative polyol transporter 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100193026
    Names
    Sterile alpha motif (SAM) domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001366987.1 → NP_001353916.1  uncharacterized protein LOC100193026 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) has the long third intron resulting from splice acceptor choice.
      Source sequence(s)
      CO528655
      UniProtKB/TrEMBL
      A0A804NJY3
      Conserved Domains (1) summary
      cl15755
      Location:15 → 49
      SAM_superfamily; SAM (Sterile alpha motif )

    2. NM_001366988.1 → NP_001353917.1  uncharacterized protein LOC100193026 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has the short third intron resulting from splice acceptor choice.l
      Source sequence(s)
      CB331533, DN224569, DV535790, DV535791
      UniProtKB/TrEMBL
      A0A1D6PPY4, B4FDJ0
      Conserved Domains (1) summary
      cl15755
      Location:15 → 49
      SAM_superfamily; SAM (Sterile alpha motif )

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      5496867..5499879
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035966643.1 → XP_035822536.1  uncharacterized protein LOC100193026 isoform X1

      UniProtKB/TrEMBL
      A0A1D6PPY4, B4FDJ0
      Conserved Domains (1) summary
      cl15755
      Location:15 → 49
      SAM_superfamily; SAM (Sterile alpha motif )

    2. XM_035966644.1 → XP_035822537.1  uncharacterized protein LOC100193026 isoform X1

      UniProtKB/TrEMBL
      A0A1D6PPY4, B4FDJ0
      Conserved Domains (1) summary
      cl15755
      Location:15 → 49
      SAM_superfamily; SAM (Sterile alpha motif )

    3. XM_035966645.1 → XP_035822538.1  uncharacterized protein LOC100193026 isoform X1

      UniProtKB/TrEMBL
      A0A1D6PPY4, B4FDJ0
      Conserved Domains (1) summary
      cl15755
      Location:15 → 49
      SAM_superfamily; SAM (Sterile alpha motif )

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001138194.1: Suppressed sequence

      Description
      NM_001138194.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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