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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_011809.1 RefSeqGene
- Range
-
4983..79664
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_000809.4 → NP_000800.2 gamma-aminobutyric acid receptor subunit alpha-4 isoform 1 precursor
See identical proteins and their annotated locations for NP_000800.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC107383, AK090780, BC037926
- Consensus CDS
-
CCDS3473.1
- UniProtKB/Swiss-Prot
- P48169, Q8IYR7
- UniProtKB/TrEMBL
-
X5D7F5
- Related
- ENSP00000264318.3, ENST00000264318.4
- Conserved Domains (1) summary
-
- cl27321
Location:13 → 541
- Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
-
NM_001204266.2 → NP_001191195.1 gamma-aminobutyric acid receptor subunit alpha-4 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks a segment in the first splice junction, resulting in an upstream AUG start codon, as compared to variant 1. The resulting isoform (2) has a shorter and different N-terminus, as compared to isoform 1.
- Source sequence(s)
-
AC107383, BC035055, BC037926, CD013893
- UniProtKB/Swiss-Prot
-
P48169
- Conserved Domains (3) summary
-
- TIGR00860
Location:5 → 522
- LIC; Cation transporter family protein
- pfam02931
Location:30 → 237
- Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
- pfam02932
Location:244 → 519
- Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region
-
NM_001204267.2 → NP_001191196.1 gamma-aminobutyric acid receptor subunit alpha-4 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks a segment in the first splice junction, resulting in an upstream AUG start codon, and lacks an in-frame exon in the middle region, as compared to variant 1. The resulting isoform (3) has a shorter and different N-terminus and lacks an internal segment, as compared to isoform 1.
- Source sequence(s)
-
AC107383, BC035055, BC037926, CD013892
- UniProtKB/Swiss-Prot
-
P48169
- Conserved Domains (3) summary
-
- TIGR00860
Location:5 → 471
- LIC; Cation transporter family protein
- pfam02931
Location:30 → 228
- Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
- pfam02932
Location:222 → 468
- Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000004.12 Reference GRCh38.p14 Primary Assembly
- Range
-
46918900..46993581 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060928.1 Alternate T2T-CHM13v2.0
- Range
-
46886225..46960936 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)