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    LOC119053583 long-wave-sensitive opsin 1 [ Artibeus jamaicensis (Jamaican fruit-eating bat) ]

    Gene ID: 119053583, updated on 30-Mar-2024

    Summary

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    Gene symbol
    LOC119053583
    Gene description
    long-wave-sensitive opsin 1
    See related
    EnsemblRapid:ENSAJMG00005021552
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Artibeus jamaicensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Stenodermatinae; Artibeus
    Also known as
    OPN1LW; OPN1MW3
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    Genomic context

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    See LOC119053583 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_03 current CSHL_Jam_final (GCF_021234435.1) Unplaced Scaffold NW_026521282.1 (506734..518198, complement)

    NW_026521282.1Genomic Context describing neighboring genes Neighboring gene transketolase like 1 Neighboring gene testis expressed 28 Neighboring gene reticulon-3-like Neighboring gene methyl-CpG binding protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_026521282 Unplaced Scaffold Reference CSHL_Jam_final Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multifactorial processes underlie parallel opsin loss in neotropical bats. Sadier A, et al. Elife, 2018 Dec 18. PMID 30560780, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phototransduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in visual perception IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in photoreceptor outer segment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    long-wave-sensitive opsin 1
    Names
    long-wavelength sensitive opsin
    opsin 1, medium wave sensitive 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_021234435.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CSHL_Jam_final Primary Assembly

    Genomic

    1. NW_026521282.1 Reference CSHL_Jam_final Primary Assembly

      Range
      506734..518198 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037151228.2 → XP_037007123.2  long-wave-sensitive opsin 1

      UniProtKB/TrEMBL
      A0A3Q9NFM5
    Nucleotide Protein
    Heading Accession and Version

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