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    SNORA11C small nucleolar RNA, H/ACA box 11C [ Homo sapiens (human) ]

    Gene ID: 100124540, updated on 2-Nov-2024

    Summary

    Official Symbol
    SNORA11Cprovided by HGNC
    Official Full Name
    small nucleolar RNA, H/ACA box 11Cprovided by HGNC
    Primary source
    HGNC:HGNC:33621
    See related
    Ensembl:ENSG00000221459 AllianceGenome:HGNC:33621
    Gene type
    snoRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See SNORA11C in Genome Data Viewer
    Location:
    Xp11.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (47388650..47388776)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (46798524..46798650)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (47248049..47248175)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 785, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:47171435-47171935 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20803 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:47176727-47177364 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29589 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:47181311-47181880 Neighboring gene U6 spliceosomal RNA Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29591 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29592 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:47240535-47241034 Neighboring gene zinc finger protein 157 Neighboring gene UBX domain protein 4 pseudogene Neighboring gene nucleophosmin 1 pseudogene 49

    Genomic regions, transcripts, and products

    General gene information

    Other Names

    • SNORA11C snoRNA
    • small nucleolar RNA, H/ACA box 11C (retrotransposed)

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003710.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL591503
      Related
      ENST00000408532.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      47388650..47388776
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      46798524..46798650
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)