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    LOC542493 golden plant 2 [ Zea mays ]

    Gene ID: 542493, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC542493
    Gene description
    golden plant 2
    Locus tag
    ZEAMMB73_Zm00001d039260
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GLK13; GRMZM2G087804
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    Genomic context

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    See LOC542493 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 3 NC_050098.1 (1587187..1591915)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 3 NC_024461.2 (750258..754986)

    Chromosome 3 - NC_050098.1Genomic Context describing neighboring genes Neighboring gene Triose phosphate/phosphate translocator TPT chloroplastic Neighboring gene dnaJ protein Neighboring gene uncharacterized LOC103649532 Neighboring gene Protein NUCLEAR FUSION DEFECTIVE 6 chloroplastic/mitochondrial Neighboring gene OB-fold nucleic acid binding domain containing protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Four mutant alleles elucidate the role of the G2 protein in the development of C(4) and C(3) photosynthesizing maize tissues. Cribb L, et al. Genetics, 2001 Oct. PMID 11606553, Free PMC Article
    2. The maize Gα gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size. Bommert P, et al. Nature, 2013 Oct 24. PMID 24025774
    3. The maize golden2 gene defines a novel class of transcriptional regulators in plants. Rossini L, et al. Plant Cell, 2001 May. PMID 11340194, Free PMC Article
    4. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    5. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Galpha gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size
      Title: The maize Gα gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    golden plant 2
    Names
    golden plant2
    transcription factor ZmGLK1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001112043.1 → NP_001105513.1  golden plant 2

      See identical proteins and their annotated locations for NP_001105513.1

      Status: PROVISIONAL

      Source sequence(s)
      AF318579
      UniProtKB/TrEMBL
      B6SVM7, Q9FUL9
      Conserved Domains (1) summary
      PLN03162
      Location:151 → 451
      PLN03162; golden-2 like transcription factor; Provisional

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050098.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      1587187..1591915
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008675216.3 → XP_008673438.1  golden plant 2 isoform X1

      See identical proteins and their annotated locations for XP_008673438.1

      UniProtKB/TrEMBL
      A0A1D6MES1, B6SVM7
      Conserved Domains (1) summary
      PLN03162
      Location:151 → 449
      PLN03162; golden-2 like transcription factor; Provisional
    Nucleotide Protein
    Heading Accession and Version

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