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    FBXO38-DT FBXO38 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 102546294, updated on 17-Sep-2024

    Summary

    Official Symbol
    FBXO38-DTprovided by HGNC
    Official Full Name
    FBXO38 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55589
    See related
    Ensembl:ENSG00000247199 AllianceGenome:HGNC:55589
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See FBXO38-DT in Genome Data Viewer
    Location:
    5q32
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (148268307..148383850, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (148802821..148918372, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (147647870..147763413, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene CAGE-defined high expression enhancer downstream of SPINK6 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:147609822-147611021 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 16 Neighboring gene MARCO like Neighboring gene serine peptidase inhibitor Kazal type 13 Neighboring gene piggyBac transposable element derived 4 pseudogene 3 Neighboring gene serine peptidase inhibitor Kazal type 7 Neighboring gene serine peptidase inhibitor Kazal type 9 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23363 Neighboring gene F-box protein 38 Neighboring gene PRELI domain containing 3B pseudogene 9 Neighboring gene MPRA-validated peak5528 silencer Neighboring gene uncharacterized LOC107986462 Neighboring gene 5-hydroxytryptamine receptor 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_105057.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011346, AC091948
      Related
      ENST00000501695.4

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      148268307..148383850 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      148802821..148918372 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)